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Integrated Analysis Of Immunotherapy Treated Clear Cell Renal Cell Carcinomas: An Exploratory Study.
J Immunother. 2022 Jan 1;45(1):35-42. doi: 10.1097/CJI.0000000000000387.
J Immunother. 2022.
PMID: 34406159
Free PMC article.
Establishing standardized immune phenotyping of metastatic melanoma by digital pathology.
Sobottka B, Nowak M, Frei AL, Haberecker M, Merki S; Tumor Profiler consortium; Levesque MP, Dummer R, Moch H, Koelzer VH.
Sobottka B, et al.
Lab Invest. 2021 Dec;101(12):1561-1570. doi: 10.1038/s41374-021-00653-y. Epub 2021 Aug 26.
Lab Invest. 2021.
PMID: 34446805
Free PMC article.
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The Tumor Profiler Study: integrated, multi-omic, functional tumor profiling for clinical decision support.
Irmisch A, Bonilla X, Chevrier S, Lehmann KV, Singer F, Toussaint NC, Esposito C, Mena J, Milani ES, Casanova R, Stekhoven DJ, Wegmann R, Jacob F, Sobottka B, Goetze S, Kuipers J, Sarabia Del Castillo J, Prummer M, Tuncel MA, Menzel U, Jacobs A, Engler S, Sivapatham S, Frei AL, Gut G, Ficek J, Miglino N; Tumor Profiler Consortium; Aebersold R, Bacac M, Beerenwinkel N, Beisel C, Bodenmiller B, Dummer R, Heinzelmann-Schwarz V, Koelzer VH, Manz MG, Moch H, Pelkmans L, Snijder B, Theocharides APA, Tolnay M, Wicki A, Wollscheid B, Rätsch G, Levesque MP.
Irmisch A, et al.
Cancer Cell. 2021 Mar 8;39(3):288-293. doi: 10.1016/j.ccell.2021.01.004. Epub 2021 Jan 21.
Cancer Cell. 2021.
PMID: 33482122
Free article.
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SCIM: universal single-cell matching with unpaired feature sets.
Stark SG, Ficek J, Locatello F, Bonilla X, Chevrier S, Singer F; Tumor Profiler Consortium; Rätsch G, Lehmann KV.
Stark SG, et al.
Bioinformatics. 2020 Dec 30;36(Suppl_2):i919-i927. doi: 10.1093/bioinformatics/btaa843.
Bioinformatics. 2020.
PMID: 33381818
Free PMC article.
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Detection of isoforms and genomic alterations by high-throughput full-length single-cell RNA sequencing in ovarian cancer.
Dondi A, Lischetti U, Jacob F, Singer F, Borgsmüller N, Coelho R; Tumor Profiler Consortium; Heinzelmann-Schwarz V, Beisel C, Beerenwinkel N.
Dondi A, et al.
Nat Commun. 2023 Nov 27;14(1):7780. doi: 10.1038/s41467-023-43387-9.
Nat Commun. 2023.
PMID: 38012143
Free PMC article.
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scROSHI: robust supervised hierarchical identification of single cells.
Prummer M, Bertolini A, Bosshard L, Barkmann F, Yates J, Boeva V; Tumor Profiler Consortium; Stekhoven D, Singer F.
Prummer M, et al.
NAR Genom Bioinform. 2023 Jun 16;5(2):lqad058. doi: 10.1093/nargab/lqad058. eCollection 2023 Jun.
NAR Genom Bioinform. 2023.
PMID: 37332656
Free PMC article.
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ROS Induction Targets Persister Cancer Cells with Low Metabolic Activity in NRAS-Mutated Melanoma.
Eichhoff OM, Stoffel CI, Käsler J, Briker L, Turko P, Karsai G, Zila N, Paulitschke V, Cheng PF, Leitner A, Bileck A, Zamboni N, Irmisch A, Balazs Z, Tastanova A, Pascoal S, Johansen P, Wegmann R, Mena J, Othman A, Viswanathan VS, Wenzina J, Aloia A, Saltari A, Dzung A; TuPro Consortium; Krauthammer M, Schreiber SL, Hornemann T, Distel M, Snijder B, Dummer R, Levesque MP.
Eichhoff OM, et al.
Cancer Res. 2023 Apr 4;83(7):1128-1146. doi: 10.1158/0008-5472.CAN-22-1826.
Cancer Res. 2023.
PMID: 36946761
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