Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

Search Page

Filters

My NCBI Filters

Text availability

Article attribute

Article type

Publication date

Search Results

24 results

Filters applied: . Clear all
Results are displayed in a computed author sort order. The Results By Year timeline is not available.
Page 1
GRAND: a database of gene regulatory network models across human conditions.
Ben Guebila M, Lopes-Ramos CM, Weighill D, Sonawane AR, Burkholz R, Shamsaei B, Platig J, Glass K, Kuijjer ML, Quackenbush J. Ben Guebila M, et al. Among authors: weighill d. Nucleic Acids Res. 2022 Jan 7;50(D1):D610-D621. doi: 10.1093/nar/gkab778. Nucleic Acids Res. 2022. PMID: 34508353 Free PMC article.
Predicting genotype-specific gene regulatory networks.
Weighill D, Ben Guebila M, Glass K, Quackenbush J, Platig J. Weighill D, et al. Genome Res. 2022 Mar;32(3):524-533. doi: 10.1101/gr.275107.120. Epub 2022 Feb 22. Genome Res. 2022. PMID: 35193937 Free PMC article.
An online notebook resource for reproducible inference, analysis and publication of gene regulatory networks.
Ben Guebila M, Weighill D, Lopes-Ramos CM, Burkholz R, Pop RT, Palepu K, Shapoval M, Fagny M, Schlauch D, Glass K, Altenbuchinger M, Kuijjer ML, Platig J, Quackenbush J. Ben Guebila M, et al. Among authors: weighill d. Nat Methods. 2022 May;19(5):511-513. doi: 10.1038/s41592-022-01479-2. Nat Methods. 2022. PMID: 35459940 Free PMC article. No abstract available.
Gene Targeting in Disease Networks.
Weighill D, Ben Guebila M, Glass K, Platig J, Yeh JJ, Quackenbush J. Weighill D, et al. Front Genet. 2021 Apr 23;12:649942. doi: 10.3389/fgene.2021.649942. eCollection 2021. Front Genet. 2021. PMID: 33968133 Free PMC article.
Gene regulatory network inference as relaxed graph matching.
Weighill D, Guebila MB, Lopes-Ramos C, Glass K, Quackenbush J, Platig J, Burkholz R. Weighill D, et al. Proc AAAI Conf Artif Intell. 2021 Feb;35(11):10263-10272. Epub 2021 May 18. Proc AAAI Conf Artif Intell. 2021. PMID: 34707916 Free PMC article.
Network Modeling of Complex Data Sets.
Jones P, Weighill D, Shah M, Climer S, Schmutz J, Sreedasyam A, Tuskan G, Jacobson D. Jones P, et al. Among authors: weighill d. Methods Mol Biol. 2020;2096:197-215. doi: 10.1007/978-1-0716-0195-2_15. Methods Mol Biol. 2020. PMID: 32720156 Free PMC article.
Defining the genetic components of callus formation: A GWAS approach.
Tuskan GA, Mewalal R, Gunter LE, Palla KJ, Carter K, Jacobson DA, Jones PC, Garcia BJ, Weighill DA, Hyatt PD, Yang Y, Zhang J, Reis N, Chen JG, Muchero W. Tuskan GA, et al. Among authors: weighill da. PLoS One. 2018 Aug 17;13(8):e0202519. doi: 10.1371/journal.pone.0202519. eCollection 2018. PLoS One. 2018. PMID: 30118526 Free PMC article.
Transcript, protein and metabolite temporal dynamics in the CAM plant Agave.
Abraham PE, Yin H, Borland AM, Weighill D, Lim SD, De Paoli HC, Engle N, Jones PC, Agh R, Weston DJ, Wullschleger SD, Tschaplinski T, Jacobson D, Cushman JC, Hettich RL, Tuskan GA, Yang X. Abraham PE, et al. Among authors: weighill d. Nat Plants. 2016 Nov 21;2:16178. doi: 10.1038/nplants.2016.178. Nat Plants. 2016. PMID: 27869799
24 results