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Unravelling the collateral damage of antibiotics on gut bacteria.
Maier L, Goemans CV, Wirbel J, Kuhn M, Eberl C, Pruteanu M, Müller P, Garcia-Santamarina S, Cacace E, Zhang B, Gekeler C, Banerjee T, Anderson EE, Milanese A, Löber U, Forslund SK, Patil KR, Zimmermann M, Stecher B, Zeller G, Bork P, Typas A. Maier L, et al. Among authors: bork p. Nature. 2021 Nov;599(7883):120-124. doi: 10.1038/s41586-021-03986-2. Epub 2021 Oct 13. Nature. 2021. PMID: 34646011 Free PMC article.
Genome phylogeny based on gene content.
Snel B, Bork P, Huynen MA. Snel B, et al. Among authors: bork p. Nat Genet. 1999 Jan;21(1):108-10. doi: 10.1038/5052. Nat Genet. 1999. PMID: 9916801
STITCH: interaction networks of chemicals and proteins.
Kuhn M, von Mering C, Campillos M, Jensen LJ, Bork P. Kuhn M, et al. Among authors: bork p. Nucleic Acids Res. 2008 Jan;36(Database issue):D684-8. doi: 10.1093/nar/gkm795. Epub 2007 Dec 15. Nucleic Acids Res. 2008. PMID: 18084021 Free PMC article.
Large-scale prediction of drug-target relationships.
Kuhn M, Campillos M, González P, Jensen LJ, Bork P. Kuhn M, et al. Among authors: bork p. FEBS Lett. 2008 Apr 9;582(8):1283-90. doi: 10.1016/j.febslet.2008.02.024. Epub 2008 Feb 20. FEBS Lett. 2008. PMID: 18291108 Free article. Review.
Drug target identification using side-effect similarity.
Campillos M, Kuhn M, Gavin AC, Jensen LJ, Bork P. Campillos M, et al. Among authors: bork p. Science. 2008 Jul 11;321(5886):263-6. doi: 10.1126/science.1158140. Science. 2008. PMID: 18621671
STITCH 2: an interaction network database for small molecules and proteins.
Kuhn M, Szklarczyk D, Franceschini A, Campillos M, von Mering C, Jensen LJ, Beyer A, Bork P. Kuhn M, et al. Among authors: bork p. Nucleic Acids Res. 2010 Jan;38(Database issue):D552-6. doi: 10.1093/nar/gkp937. Epub 2009 Nov 6. Nucleic Acids Res. 2010. PMID: 19897548 Free PMC article.
A side effect resource to capture phenotypic effects of drugs.
Kuhn M, Campillos M, Letunic I, Jensen LJ, Bork P. Kuhn M, et al. Among authors: bork p. Mol Syst Biol. 2010;6:343. doi: 10.1038/msb.2009.98. Epub 2010 Jan 19. Mol Syst Biol. 2010. PMID: 20087340 Free PMC article.
Drug-induced regulation of target expression.
Iskar M, Campillos M, Kuhn M, Jensen LJ, van Noort V, Bork P. Iskar M, et al. Among authors: bork p. PLoS Comput Biol. 2010 Sep 9;6(9):e1000925. doi: 10.1371/journal.pcbi.1000925. PLoS Comput Biol. 2010. PMID: 20838579 Free PMC article.
Enterotypes of the human gut microbiome.
Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, Hansen T, Hattori M, Hayashi T, Kleerebezem M, Kurokawa K, Leclerc M, Levenez F, Manichanh C, Nielsen HB, Nielsen T, Pons N, Poulain J, Qin J, Sicheritz-Ponten T, Tims S, Torrents D, Ugarte E, Zoetendal EG, Wang J, Guarner F, Pedersen O, de Vos WM, Brunak S, Doré J; MetaHIT Consortium; Antolín M, Artiguenave F, Blottiere HM, Almeida M, Brechot C, Cara C, Chervaux C, Cultrone A, Delorme C, Denariaz G, Dervyn R, Foerstner KU, Friss C, van de Guchte M, Guedon E, Haimet F, Huber W, van Hylckama-Vlieg J, Jamet A, Juste C, Kaci G, Knol J, Lakhdari O, Layec S, Le Roux K, Maguin E, Mérieux A, Melo Minardi R, M'rini C, Muller J, Oozeer R, Parkhill J, Renault P, Rescigno M, Sanchez N, Sunagawa S, Torrejon A, Turner K, Vandemeulebrouck G, Varela E, Winogradsky Y, Zeller G, Weissenbach J, Ehrlich SD, Bork P. Arumugam M, et al. Among authors: bork p. Nature. 2011 May 12;473(7346):174-80. doi: 10.1038/nature09944. Epub 2011 Apr 20. Nature. 2011. PMID: 21508958 Free PMC article.
688 results