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Genomic reconstruction of the SARS-CoV-2 epidemic in England.
Vöhringer HS, Sanderson T, Sinnott M, De Maio N, Nguyen T, Goater R, Schwach F, Harrison I, Hellewell J, Ariani CV, Gonçalves S, Jackson DK, Johnston I, Jung AW, Saint C, Sillitoe J, Suciu M, Goldman N, Panovska-Griffiths J; Wellcome Sanger Institute COVID-19 Surveillance Team; COVID-19 Genomics UK (COG-UK) Consortium*; Birney E, Volz E, Funk S, Kwiatkowski D, Chand M, Martincorena I, Barrett JC, Gerstung M. Vöhringer HS, et al. Among authors: de maio n. Nature. 2021 Dec;600(7889):506-511. doi: 10.1038/s41586-021-04069-y. Epub 2021 Oct 14. Nature. 2021. PMID: 34649268 Free PMC article.
Stability of SARS-CoV-2 phylogenies.
Turakhia Y, De Maio N, Thornlow B, Gozashti L, Lanfear R, Walker CR, Hinrichs AS, Fernandes JD, Borges R, Slodkowicz G, Weilguny L, Haussler D, Goldman N, Corbett-Detig R. Turakhia Y, et al. Among authors: de maio n. PLoS Genet. 2020 Nov 18;16(11):e1009175. doi: 10.1371/journal.pgen.1009175. eCollection 2020 Nov. PLoS Genet. 2020. PMID: 33206635 Free PMC article.
Mutation rates and selection on synonymous mutations in SARS-CoV-2.
De Maio N, Walker CR, Turakhia Y, Lanfear R, Corbett-Detig R, Goldman N. De Maio N, et al. bioRxiv [Preprint]. 2021 Jan 14:2021.01.14.426705. doi: 10.1101/2021.01.14.426705. bioRxiv. 2021. PMID: 33469589 Free PMC article. Updated. Preprint.
Want to track pandemic variants faster? Fix the bioinformatics bottleneck.
Hodcroft EB, De Maio N, Lanfear R, MacCannell DR, Minh BQ, Schmidt HA, Stamatakis A, Goldman N, Dessimoz C. Hodcroft EB, et al. Among authors: de maio n. Nature. 2021 Mar;591(7848):30-33. doi: 10.1038/d41586-021-00525-x. Nature. 2021. PMID: 33649511 No abstract available.
A phylogenetic approach for weighting genetic sequences.
De Maio N, Alekseyenko AV, Coleman-Smith WJ, Pardi F, Suchard MA, Tamuri AU, Truszkowski J, Goldman N. De Maio N, et al. BMC Bioinformatics. 2021 May 28;22(1):285. doi: 10.1186/s12859-021-04183-8. BMC Bioinformatics. 2021. PMID: 34049487 Free PMC article.
58 results