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Deep sequencing of HIV-1 reveals extensive subtype variation and drug resistance after failure of first-line antiretroviral regimens in Nigeria.
El Bouzidi K, Datir RP, Kwaghe V, Roy S, Frampton D, Breuer J, Ogbanufe O, Murtala-Ibrahim F, Charurat M, Dakum P, Sabin CA, Ndembi N, Gupta RK. El Bouzidi K, et al. Among authors: breuer j. J Antimicrob Chemother. 2022 Feb 2;77(2):474-482. doi: 10.1093/jac/dkab385. J Antimicrob Chemother. 2022. PMID: 34741609 Free PMC article.
RNA-seq analysis of host and viral gene expression highlights interaction between varicella zoster virus and keratinocyte differentiation.
Jones M, Dry IR, Frampton D, Singh M, Kanda RK, Yee MB, Kellam P, Hollinshead M, Kinchington PR, O'Toole EA, Breuer J. Jones M, et al. Among authors: breuer j. PLoS Pathog. 2014 Jan 30;10(1):e1003896. doi: 10.1371/journal.ppat.1003896. eCollection 2014 Jan. PLoS Pathog. 2014. PMID: 24497829 Free PMC article. Clinical Trial.
Comparison of Next-Generation Sequencing Technologies for Comprehensive Assessment of Full-Length Hepatitis C Viral Genomes.
Thomson E, Ip CL, Badhan A, Christiansen MT, Adamson W, Ansari MA, Bibby D, Breuer J, Brown A, Bowden R, Bryant J, Bonsall D, Da Silva Filipe A, Hinds C, Hudson E, Klenerman P, Lythgow K, Mbisa JL, McLauchlan J, Myers R, Piazza P, Roy S, Trebes A, Sreenu VB, Witteveldt J; STOP-HCV Consortium; Barnes E, Simmonds P. Thomson E, et al. Among authors: breuer j. J Clin Microbiol. 2016 Oct;54(10):2470-84. doi: 10.1128/JCM.00330-16. Epub 2016 Jul 6. J Clin Microbiol. 2016. PMID: 27385709 Free PMC article.
On the effective depth of viral sequence data.
Illingworth CJR, Roy S, Beale MA, Tutill H, Williams R, Breuer J. Illingworth CJR, et al. Among authors: breuer j. Virus Evol. 2017 Nov 14;3(2):vex030. doi: 10.1093/ve/vex030. eCollection 2017 Jul. Virus Evol. 2017. PMID: 29250429 Free PMC article.
Human cytomegalovirus haplotype reconstruction reveals high diversity due to superinfection and evidence of within-host recombination.
Cudini J, Roy S, Houldcroft CJ, Bryant JM, Depledge DP, Tutill H, Veys P, Williams R, Worth AJJ, Tamuri AU, Goldstein RA, Breuer J. Cudini J, et al. Among authors: breuer j. Proc Natl Acad Sci U S A. 2019 Mar 19;116(12):5693-5698. doi: 10.1073/pnas.1818130116. Epub 2019 Feb 28. Proc Natl Acad Sci U S A. 2019. PMID: 30819890 Free PMC article.
High prevalence of integrase mutation L74I in West African HIV-1 subtypes prior to integrase inhibitor treatment.
El Bouzidi K, Kemp SA, Datir RP, Murtala-Ibrahim F, Aliyu A, Kwaghe V, Frampton D, Roy S, Breuer J, Sabin CA, Ogbanufe O, Charurat ME, Bonsall D, Golubchik T, Fraser C, Dakum P, Ndembi N, Gupta RK. El Bouzidi K, et al. Among authors: breuer j. J Antimicrob Chemother. 2020 Jun 1;75(6):1575-1579. doi: 10.1093/jac/dkaa033. J Antimicrob Chemother. 2020. PMID: 32105319 Free PMC article.
732 results