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MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging.
Schapiro D, Sokolov A, Yapp C, Chen YA, Muhlich JL, Hess J, Creason AL, Nirmal AJ, Baker GJ, Nariya MK, Lin JR, Maliga Z, Jacobson CA, Hodgman MW, Ruokonen J, Farhi SL, Abbondanza D, McKinley ET, Persson D, Betts C, Sivagnanam S, Regev A, Goecks J, Coffey RJ, Coussens LM, Santagata S, Sorger PK. Schapiro D, et al. Among authors: hess j. Nat Methods. 2022 Mar;19(3):311-315. doi: 10.1038/s41592-021-01308-y. Epub 2021 Nov 25. Nat Methods. 2022. PMID: 34824477 Free PMC article.
Cytometry profiling of ex vivo recall responses to Coxiella burnetii in previously naturally exposed individuals reveals long-term changes in both adaptive and innate immune cellular compartments.
Raju Paul S, Scholzen A, Reeves PM, Shepard R, Hess JM, Dzeng RK, Korek S, Garritsen A, Poznansky MC, Sluder AE. Raju Paul S, et al. Front Immunol. 2023 Oct 11;14:1249581. doi: 10.3389/fimmu.2023.1249581. eCollection 2023. Front Immunol. 2023. PMID: 37885896 Free PMC article.
B cell-dependent subtypes and treatment-based immune correlates to survival in stage 3 and 4 lung adenocarcinomas.
Raju Paul S, Valiev I, Korek SE, Zyrin V, Shamsutdinova D, Gancharova O, Zaitsev A, Nuzhdina E, Davies DL, Dagogo-Jack I, Frenkel F, Brown JH, Hess JM, Viet S, Petersen JL, Wright CD, Ott HC, Auchincloss HG, Muniappan A, Shioda T, Lanuti M, Davis CM, Ehli EA, Hung YP, Mino-Kenudson M, Tsiper M, Sluder AE, Reeves PM, Kotlov N, Bagaev A, Ataullakhanov R, Poznansky MC. Raju Paul S, et al. FASEB Bioadv. 2023 Feb 16;5(4):156-170. doi: 10.1096/fba.2023-00009. eCollection 2023 Apr. FASEB Bioadv. 2023. PMID: 37020749 Free PMC article.
Metabolic pathway-based subtypes associate glycan biosynthesis and treatment response in head and neck cancer.
Dankó B, Hess J, Unger K, Samaga D, Walz C, Walch A, Sun N, Baumeister P, Zeng PYF, Walter F, Marschner S, Späth R, Gires O, Herkommer T, Dazeh R, Matos T, Kreutzer L, Matschke J, Eul K, Klauschen F, Pflugradt U, Canis M, Ganswindt U, Mymryk JS, Wollenberg B, Nichols AC, Belka C, Zitzelsberger H, Lauber K, Selmansberger M. Dankó B, et al. Among authors: hess j. NPJ Precis Oncol. 2024 May 23;8(1):116. doi: 10.1038/s41698-024-00602-0. NPJ Precis Oncol. 2024. PMID: 38783045 Free PMC article.
CAM evolution is associated with gene family expansion in an explosive bromeliad radiation.
Groot Crego C, Hess J, Yardeni G, de La Harpe M, Priemer C, Beclin F, Saadain S, Cauz-Santos LA, Temsch EM, Weiss-Schneeweiss H, Barfuss MHJ, Till W, Weckwerth W, Heyduk K, Lexer C, Paun O, Leroy T. Groot Crego C, et al. Among authors: hess j. Plant Cell. 2024 Apr 30:koae130. doi: 10.1093/plcell/koae130. Online ahead of print. Plant Cell. 2024. PMID: 38686825
2,174 results