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T cell characteristics associated with toxicity to immune checkpoint blockade in patients with melanoma.
Nat Med. 2022 Feb;28(2):353-362. doi: 10.1038/s41591-021-01623-z. Epub 2022 Jan 13.
Nat Med. 2022.
PMID: 35027754
Free PMC article.
High-resolution alignment of single-cell and spatial transcriptomes with CytoSPACE.
Vahid MR, Brown EL, Steen CB, Zhang W, Jeon HS, Kang M, Gentles AJ, Newman AM.
Vahid MR, et al.
Nat Biotechnol. 2023 Nov;41(11):1543-1548. doi: 10.1038/s41587-023-01697-9. Epub 2023 Mar 6.
Nat Biotechnol. 2023.
PMID: 36879008
Free PMC article.
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DiSiR: fast and robust method to identify ligand-receptor interactions at subunit level from single-cell RNA-sequencing data.
Vahid MR, Kurlovs AH, Andreani T, Augé F, Olfati-Saber R, de Rinaldis E, Rapaport F, Savova V.
Vahid MR, et al.
NAR Genom Bioinform. 2023 Mar 23;5(1):lqad030. doi: 10.1093/nargab/lqad030. eCollection 2023 Mar.
NAR Genom Bioinform. 2023.
PMID: 36968431
Free PMC article.
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Effect of Pixelation on the Parameter Estimation of Single Molecule Trajectories.
Vahid MR, Hanzon B, Ober RJ.
Vahid MR, et al.
IEEE Trans Comput Imaging. 2020 Nov 23;7:98-113. doi: 10.1109/TCI.2020.3039951. eCollection 2021.
IEEE Trans Comput Imaging. 2020.
PMID: 33604418
Free PMC article.
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A state space based approach to localizing single molecules from multi-emitter images.
Vahid MR, Chao J, Ward ES, Ober RJ.
Vahid MR, et al.
Proc SPIE Int Soc Opt Eng. 2017 Jan 28;10070:100700J. doi: 10.1117/12.2253175. Epub 2017 Feb 17.
Proc SPIE Int Soc Opt Eng. 2017.
PMID: 28684885
Free PMC article.
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State space approach to single molecule localization in fluorescence microscopy.
Vahid MR, Chao J, Kim D, Ward ES, Ober RJ.
Vahid MR, et al.
Biomed Opt Express. 2017 Feb 6;8(3):1332-1355. doi: 10.1364/BOE.8.001332. eCollection 2017 Mar 1.
Biomed Opt Express. 2017.
PMID: 28663832
Free PMC article.
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