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Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function.
Martin DP, Lytras S, Lucaci AG, Maier W, Grüning B, Shank SD, Weaver S, MacLean OA, Orton RJ, Lemey P, Boni MF, Tegally H, Harkins GW, Scheepers C, Bhiman JN, Everatt J, Amoako DG, San JE, Giandhari J, Sigal A; NGS-SA; Williamson C, Hsiao NY, von Gottberg A, De Klerk A, Shafer RW, Robertson DL, Wilkinson RJ, Sewell BT, Lessells R, Nekrutenko A, Greaney AJ, Starr TN, Bloom JD, Murrell B, Wilkinson E, Gupta RK, de Oliveira T, Kosakovsky Pond SL. Martin DP, et al. Among authors: gruning b. Mol Biol Evol. 2022 Apr 11;39(4):msac061. doi: 10.1093/molbev/msac061. Mol Biol Evol. 2022. PMID: 35325204 Free PMC article.
No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics.
Baker D, van den Beek M, Blankenberg D, Bouvier D, Chilton J, Coraor N, Coppens F, Eguinoa I, Gladman S, Grüning B, Keener N, Larivière D, Lonie A, Kosakovsky Pond S, Maier W, Nekrutenko A, Taylor J, Weaver S. Baker D, et al. Among authors: gruning b. PLoS Pathog. 2020 Aug 13;16(8):e1008643. doi: 10.1371/journal.ppat.1008643. eCollection 2020 Aug. PLoS Pathog. 2020. PMID: 32790776 Free PMC article.
Freely accessible ready to use global infrastructure for SARS-CoV-2 monitoring.
Maier W, Bray S, van den Beek M, Bouvier D, Coraor N, Miladi M, Singh B, De Argila JR, Baker D, Roach N, Gladman S, Coppens F, Martin DP, Lonie A, Grüning B, Kosakovsky Pond SL, Nekrutenko A. Maier W, et al. Among authors: gruning b. bioRxiv [Preprint]. 2021 Mar 25:2021.03.25.437046. doi: 10.1101/2021.03.25.437046. bioRxiv. 2021. PMID: 33791701 Free PMC article. Updated. Preprint.
Fostering accessible online education using Galaxy as an e-learning platform.
Serrano-Solano B, Föll MC, Gallardo-Alba C, Erxleben A, Rasche H, Hiltemann S, Fahrner M, Dunning MJ, Schulz MH, Scholtz B, Clements D, Nekrutenko A, Batut B, Grüning BA. Serrano-Solano B, et al. Among authors: gruning ba. PLoS Comput Biol. 2021 May 13;17(5):e1008923. doi: 10.1371/journal.pcbi.1008923. eCollection 2021 May. PLoS Comput Biol. 2021. PMID: 33983944 Free PMC article.
Ready-to-use public infrastructure for global SARS-CoV-2 monitoring.
Maier W, Bray S, van den Beek M, Bouvier D, Coraor N, Miladi M, Singh B, De Argila JR, Baker D, Roach N, Gladman S, Coppens F, Martin DP, Lonie A, Grüning B, Kosakovsky Pond SL, Nekrutenko A. Maier W, et al. Among authors: gruning b. Nat Biotechnol. 2021 Oct;39(10):1178-1179. doi: 10.1038/s41587-021-01069-1. Nat Biotechnol. 2021. PMID: 34588690 Free PMC article. No abstract available.
Selection analysis identifies unusual clustered mutational changes in Omicron lineage BA.1 that likely impact Spike function.
Martin DP, Lytras S, Lucaci AG, Maier W, Grüning B, Shank SD, Weaver S, MacLean OA, Orton RJ, Lemey P, Boni MF, Tegally H, Harkins G, Scheepers C, Bhiman JN, Everatt J, Amoako DG, San JE, Giandhari J, Sigal A; NGS-SA; Williamson C, Hsiao NY, von Gottberg A, De Klerk A, Shafer RW, Robertson DL, Wilkinson RJ, Sewell BT, Lessells R, Nekrutenko A, Greaney AJ, Starr TN, Bloom JD, Murrell B, Wilkinson E, Gupta RK, de Oliveira T, Kosakovsky Pond SL. Martin DP, et al. Among authors: gruning b. bioRxiv [Preprint]. 2022 Jan 18:2022.01.14.476382. doi: 10.1101/2022.01.14.476382. bioRxiv. 2022. PMID: 35075456 Free PMC article. Updated. Preprint.
Practical Computational Reproducibility in the Life Sciences.
Grüning B, Chilton J, Köster J, Dale R, Soranzo N, van den Beek M, Goecks J, Backofen R, Nekrutenko A, Taylor J. Grüning B, et al. Cell Syst. 2018 Jun 27;6(6):631-635. doi: 10.1016/j.cels.2018.03.014. Cell Syst. 2018. PMID: 29953862 Free PMC article.
124 results