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Selection Analysis Identifies Clusters of Unusual Mutational Changes in Omicron Lineage BA.1 That Likely Impact Spike Function.
Martin DP, Lytras S, Lucaci AG, Maier W, Grüning B, Shank SD, Weaver S, MacLean OA, Orton RJ, Lemey P, Boni MF, Tegally H, Harkins GW, Scheepers C, Bhiman JN, Everatt J, Amoako DG, San JE, Giandhari J, Sigal A; NGS-SA; Williamson C, Hsiao NY, von Gottberg A, De Klerk A, Shafer RW, Robertson DL, Wilkinson RJ, Sewell BT, Lessells R, Nekrutenko A, Greaney AJ, Starr TN, Bloom JD, Murrell B, Wilkinson E, Gupta RK, de Oliveira T, Kosakovsky Pond SL. Martin DP, et al. Mol Biol Evol. 2022 Apr 11;39(4):msac061. doi: 10.1093/molbev/msac061. Mol Biol Evol. 2022. PMID: 35325204 Free PMC article.
Conserved positive selection signals in gp41 across multiple subtypes and difference in selection signals detectable in gp41 sequences sampled during acute and chronic HIV-1 subtype C infection.
Bandawe GP, Martin DP, Treurnicht F, Mlisana K, Karim SS, Williamson C; CAPRISA 002 Acute Infection Study Team. Bandawe GP, et al. Among authors: martin dp. Virol J. 2008 Nov 24;5:141. doi: 10.1186/1743-422X-5-141. Virol J. 2008. PMID: 19025632 Free PMC article.
The spread of tomato yellow leaf curl virus from the Middle East to the world.
Lefeuvre P, Martin DP, Harkins G, Lemey P, Gray AJ, Meredith S, Lakay F, Monjane A, Lett JM, Varsani A, Heydarnejad J. Lefeuvre P, et al. Among authors: martin dp. PLoS Pathog. 2010 Oct 28;6(10):e1001164. doi: 10.1371/journal.ppat.1001164. PLoS Pathog. 2010. PMID: 21060815 Free PMC article.
Analysing recombination in nucleotide sequences.
Martin DP, Lemey P, Posada D. Martin DP, et al. Mol Ecol Resour. 2011 Nov;11(6):943-55. doi: 10.1111/j.1755-0998.2011.03026.x. Epub 2011 May 19. Mol Ecol Resour. 2011. PMID: 21592314 Review.
Reconstructing the history of maize streak virus strain a dispersal to reveal diversification hot spots and its origin in southern Africa.
Monjane AL, Harkins GW, Martin DP, Lemey P, Lefeuvre P, Shepherd DN, Oluwafemi S, Simuyandi M, Zinga I, Komba EK, Lakoutene DP, Mandakombo N, Mboukoulida J, Semballa S, Tagne A, Tiendrébéogo F, Erdmann JB, van Antwerpen T, Owor BE, Flett B, Ramusi M, Windram OP, Syed R, Lett JM, Briddon RW, Markham PG, Rybicki EP, Varsani A. Monjane AL, et al. Among authors: martin dp. J Virol. 2011 Sep;85(18):9623-36. doi: 10.1128/JVI.00640-11. Epub 2011 Jun 29. J Virol. 2011. PMID: 21715477 Free PMC article.
615 results