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The complete sequence of a human genome.
Science. 2022 Apr;376(6588):44-53. doi: 10.1126/science.abj6987. Epub 2022 Mar 31.
Science. 2022.
PMID: 35357919
Free PMC article.
Identification of Structural Variation in Chimpanzees Using Optical Mapping and Nanopore Sequencing.
Soto DC, Shew C, Mastoras M, Schmidt JM, Sahasrabudhe R, Kaya G, Andrés AM, Dennis MY.
Soto DC, et al.
Genes (Basel). 2020 Mar 4;11(3):276. doi: 10.3390/genes11030276.
Genes (Basel). 2020.
PMID: 32143403
Free PMC article.
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Single-cell strand sequencing of a macaque genome reveals multiple nested inversions and breakpoint reuse during primate evolution.
Maggiolini FAM, Sanders AD, Shew CJ, Sulovari A, Mao Y, Puig M, Catacchio CR, Dellino M, Palmisano D, Mercuri L, Bitonto M, Porubský D, Cáceres M, Eichler EE, Ventura M, Dennis MY, Korbel JO, Antonacci F.
Maggiolini FAM, et al. Among authors: shew cj.
Genome Res. 2020 Nov;30(11):1680-1693. doi: 10.1101/gr.265322.120. Epub 2020 Oct 22.
Genome Res. 2020.
PMID: 33093070
Free PMC article.
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Diverse Molecular Mechanisms Contribute to Differential Expression of Human Duplicated Genes.
Shew CJ, Carmona-Mora P, Soto DC, Mastoras M, Roberts E, Rosas J, Jagannathan D, Kaya G, O'Geen H, Dennis MY.
Shew CJ, et al.
Mol Biol Evol. 2021 Jul 29;38(8):3060-3077. doi: 10.1093/molbev/msab131.
Mol Biol Evol. 2021.
PMID: 34009325
Free PMC article.
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Complete genomic and epigenetic maps of human centromeres.
Altemose N, Logsdon GA, Bzikadze AV, Sidhwani P, Langley SA, Caldas GV, Hoyt SJ, Uralsky L, Ryabov FD, Shew CJ, Sauria MEG, Borchers M, Gershman A, Mikheenko A, Shepelev VA, Dvorkina T, Kunyavskaya O, Vollger MR, Rhie A, McCartney AM, Asri M, Lorig-Roach R, Shafin K, Lucas JK, Aganezov S, Olson D, de Lima LG, Potapova T, Hartley GA, Haukness M, Kerpedjiev P, Gusev F, Tigyi K, Brooks S, Young A, Nurk S, Koren S, Salama SR, Paten B, Rogaev EI, Streets A, Karpen GH, Dernburg AF, Sullivan BA, Straight AF, Wheeler TJ, Gerton JL, Eichler EE, Phillippy AM, Timp W, Dennis MY, O'Neill RJ, Zook JM, Schatz MC, Pevzner PA, Diekhans M, Langley CH, Alexandrov IA, Miga KH.
Altemose N, et al. Among authors: shew cj.
Science. 2022 Apr;376(6588):eabl4178. doi: 10.1126/science.abl4178. Epub 2022 Apr 1.
Science. 2022.
PMID: 35357911
Free PMC article.
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Genomic structural variation: A complex but important driver of human evolution.
Soto DC, Uribe-Salazar JM, Shew CJ, Sekar A, McGinty SP, Dennis MY.
Soto DC, et al. Among authors: shew cj.
Am J Biol Anthropol. 2023 Aug;181 Suppl 76(Suppl 76):118-144. doi: 10.1002/ajpa.24713. Epub 2023 Feb 16.
Am J Biol Anthropol. 2023.
PMID: 36794631
Review.
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Dire wolves were the last of an ancient New World canid lineage.
Perri AR, Mitchell KJ, Mouton A, Álvarez-Carretero S, Hulme-Beaman A, Haile J, Jamieson A, Meachen J, Lin AT, Schubert BW, Ameen C, Antipina EE, Bover P, Brace S, Carmagnini A, Carøe C, Samaniego Castruita JA, Chatters JC, Dobney K, Dos Reis M, Evin A, Gaubert P, Gopalakrishnan S, Gower G, Heiniger H, Helgen KM, Kapp J, Kosintsev PA, Linderholm A, Ozga AT, Presslee S, Salis AT, Saremi NF, Shew C, Skerry K, Taranenko DE, Thompson M, Sablin MV, Kuzmin YV, Collins MJ, Sinding MS, Gilbert MTP, Stone AC, Shapiro B, Van Valkenburgh B, Wayne RK, Larson G, Cooper A, Frantz LAF.
Perri AR, et al.
Nature. 2021 Mar;591(7848):87-91. doi: 10.1038/s41586-020-03082-x. Epub 2021 Jan 13.
Nature. 2021.
PMID: 33442059
Free article.
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Mouse MORC3 is a GHKL ATPase that localizes to H3K4me3 marked chromatin.
Li S, Yen L, Pastor WA, Johnston JB, Du J, Shew CJ, Liu W, Ho J, Stender B, Clark AT, Burlingame AL, Daxinger L, Patel DJ, Jacobsen SE.
Li S, et al. Among authors: shew cj.
Proc Natl Acad Sci U S A. 2016 Aug 30;113(35):E5108-16. doi: 10.1073/pnas.1609709113. Epub 2016 Aug 15.
Proc Natl Acad Sci U S A. 2016.
PMID: 27528681
Free PMC article.
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