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Improved integration of single-cell transcriptome and surface protein expression by LinQ-View.
Li L, Dugan HL, Stamper CT, Lan LY, Asby NW, Knight M, Stovicek O, Zheng NY, Madariaga ML, Shanmugarajah K, Jansen MO, Changrob S, Utset HA, Henry C, Nelson C, Jedrzejczak RP, Fremont DH, Joachimiak A, Krammer F, Huang J, Khan AA, Wilson PC. Li L, et al. Among authors: khan aa. Cell Rep Methods. 2021 Jul 23;1(4):100056. doi: 10.1016/j.crmeth.2021.100056. eCollection 2021 Aug 23. Cell Rep Methods. 2021. PMID: 35475142 Free PMC article.
Single-Cell Genomics: Approaches and Utility in Immunology.
Neu KE, Tang Q, Wilson PC, Khan AA. Neu KE, et al. Among authors: khan aa. Trends Immunol. 2017 Feb;38(2):140-149. doi: 10.1016/j.it.2016.12.001. Epub 2017 Jan 13. Trends Immunol. 2017. PMID: 28094102 Free PMC article. Review.
BASIC: BCR assembly from single cells.
Canzar S, Neu KE, Tang Q, Wilson PC, Khan AA. Canzar S, et al. Among authors: khan aa. Bioinformatics. 2017 Feb 1;33(3):425-427. doi: 10.1093/bioinformatics/btw631. Bioinformatics. 2017. PMID: 28172415 Free PMC article.
Spec-seq unveils transcriptional subpopulations of antibody-secreting cells following influenza vaccination.
Neu KE, Guthmiller JJ, Huang M, La J, Vieira MC, Kim K, Zheng NY, Cortese M, Tepora ME, Hamel NJ, Rojas KT, Henry C, Shaw D, Dulberger CL, Pulendran B, Cobey S, Khan AA, Wilson PC. Neu KE, et al. Among authors: khan aa. J Clin Invest. 2019 Jan 2;129(1):93-105. doi: 10.1172/JCI121341. Epub 2018 Nov 19. J Clin Invest. 2019. PMID: 30457979 Free PMC article.
Gut commensal bacteria enhance pathogenesis of a tumorigenic murine retrovirus.
Spring J, Khan AA, Lara S, O'Grady K, Wilks J, Gurbuxani S, Erickson S, Fischbach M, Jacobson A, Chervonsky A, Golovkina T. Spring J, et al. Among authors: khan aa. Cell Rep. 2022 Sep 13;40(11):111341. doi: 10.1016/j.celrep.2022.111341. Cell Rep. 2022. PMID: 36103821 Free PMC article.
Polymorphic Immune Mechanisms Regulate Commensal Repertoire.
Khan AA, Yurkovetskiy L, O'Grady K, Pickard JM, de Pooter R, Antonopoulos DA, Golovkina T, Chervonsky A. Khan AA, et al. Cell Rep. 2019 Oct 15;29(3):541-550.e4. doi: 10.1016/j.celrep.2019.09.010. Cell Rep. 2019. PMID: 31618625 Free PMC article.
A pan-cancer organoid platform for precision medicine.
Larsen BM, Kannan M, Langer LF, Leibowitz BD, Bentaieb A, Cancino A, Dolgalev I, Drummond BE, Dry JR, Ho CS, Khullar G, Krantz BA, Mapes B, McKinnon KE, Metti J, Perera JF, Rand TA, Sanchez-Freire V, Shaxted JM, Stein MM, Streit MA, Tan YC, Zhang Y, Zhao E, Venkataraman J, Stumpe MC, Borgia JA, Masood A, Catenacci DVT, Mathews JV, Gursel DB, Wei JJ, Welling TH, Simeone DM, White KP, Khan AA, Igartua C, Salahudeen AA. Larsen BM, et al. Among authors: khan aa. Cell Rep. 2021 Jul 27;36(4):109429. doi: 10.1016/j.celrep.2021.109429. Cell Rep. 2021. PMID: 34320344 Free article.
Microbiota-dependent proteolysis of gluten subverts diet-mediated protection against type 1 diabetes.
Funsten MC, Yurkovetskiy LA, Kuznetsov A, Reiman D, Hansen CHF, Senter KI, Lee J, Ratiu J, Dahal-Koirala S, Antonopoulos DA, Dunny GM, Sollid LM, Serreze D, Khan AA, Chervonsky AV. Funsten MC, et al. Among authors: khan aa. Cell Host Microbe. 2023 Feb 8;31(2):213-227.e9. doi: 10.1016/j.chom.2022.12.009. Epub 2023 Jan 4. Cell Host Microbe. 2023. PMID: 36603588 Free PMC article.
2,891 results