Erdem C - Search Results

1

A scalable, open-source implementation of a large-scale mechanistic model for single cell proliferation and death signaling.

Erdem C, Mutsuddy A, Bensman EM, Dodd WB, Saint-Antoine MM, Bouhaddou M, Blake RC, Gross SM, Heiser LM, Feltus FA, Birtwistle MR. Erdem C, et al. Nat Commun. 2022 Jun 21;13(1):3555. doi: 10.1038/s41467-022-31138-1. Nat Commun. 2022. PMID: 35729113 Free PMC article.

2

Mesowestern Blot: Simultaneous Analysis of Hundreds of Submicroliter Lysates.

Zadeh CO, Huggins JR, Sarmah D, Westbury BC, Interiano WR, Jordan MC, Phillips SA, Dodd WB, Meredith WO, Harold NJ, Erdem C, Birtwistle MR. Zadeh CO, et al. Among authors: erdem c. ACS Omega. 2022 Aug 11;7(33):28912-28923. doi: 10.1021/acsomega.2c02201. eCollection 2022 Aug 23. ACS Omega. 2022. PMID: 36033686 Free PMC article.

3

A multi-omic analysis of MCF10A cells provides a resource for integrative assessment of ligand-mediated molecular and phenotypic responses.

Gross SM, Dane MA, Smith RL, Devlin KL, McLean IC, Derrick DS, Mills CE, Subramanian K, London AB, Torre D, Evangelista JE, Clarke DJB, Xie Z, Erdem C, Lyons N, Natoli T, Pessa S, Lu X, Mullahoo J, Li J, Adam M, Wassie B, Liu M, Kilburn DF, Liby TA, Bucher E, Sanchez-Aguila C, Daily K, Omberg L, Wang Y, Jacobson C, Yapp C, Chung M, Vidovic D, Lu Y, Schurer S, Lee A, Pillai A, Subramanian A, Papanastasiou M, Fraenkel E, Feiler HS, Mills GB, Jaffe JD, Ma'ayan A, Birtwistle MR, Sorger PK, Korkola JE, Gray JW, Heiser LM. Gross SM, et al. Among authors: erdem c. Commun Biol. 2022 Oct 7;5(1):1066. doi: 10.1038/s42003-022-03975-9. Commun Biol. 2022. PMID: 36207580 Free PMC article.

4

Computational speed-up of large-scale, single-cell model simulations via a fully integrated SBML-based format.

Mutsuddy A, Erdem C, Huggins JR, Salim M, Cook D, Hobbs N, Feltus FA, Birtwistle MR. Mutsuddy A, et al. Among authors: erdem c. Bioinform Adv. 2023 Mar 23;3(1):vbad039. doi: 10.1093/bioadv/vbad039. eCollection 2023. Bioinform Adv. 2023. PMID: 37020976 Free PMC article.

5

MOBILE pipeline enables identification of context-specific networks and regulatory mechanisms.

Erdem C, Gross SM, Heiser LM, Birtwistle MR. Erdem C, et al. Nat Commun. 2023 Jul 6;14(1):3991. doi: 10.1038/s41467-023-39729-2. Nat Commun. 2023. PMID: 37414767 Free PMC article.

6

MEMMAL: A tool for expanding large-scale mechanistic models with machine learned associations and big datasets.

Erdem C, Birtwistle MR. Erdem C, et al. Front Syst Biol. 2023;3:1099413. doi: 10.3389/fsysb.2023.1099413. Epub 2023 Mar 9. Front Syst Biol. 2023. PMID: 38269333 Free PMC article.

7

Proteomic Screening and Lasso Regression Reveal Differential Signaling in Insulin and Insulin-like Growth Factor I (IGF1) Pathways.

Erdem C, Nagle AM, Casa AJ, Litzenburger BC, Wang YF, Taylor DL, Lee AV, Lezon TR. Erdem C, et al. Mol Cell Proteomics. 2016 Sep;15(9):3045-57. doi: 10.1074/mcp.M115.057729. Epub 2016 Jun 30. Mol Cell Proteomics. 2016. PMID: 27364358 Free PMC article.

8

Inhibition of RPS6K reveals context-dependent Akt activity in luminal breast cancer cells.

Erdem C, Lee AV, Taylor DL, Lezon TR. Erdem C, et al. PLoS Comput Biol. 2021 Jun 30;17(6):e1009125. doi: 10.1371/journal.pcbi.1009125. eCollection 2021 Jun. PLoS Comput Biol. 2021. PMID: 34191793 Free PMC article.

9

Association of Visual-Based Signals with Electroencephalography Patterns in Enhancing the Drowsiness Detection in Drivers with Obstructive Sleep Apnea.

Minhas R, Peker NY, Hakkoz MA, Arbatli S, Celik Y, Erdem CE, Semiz B, Peker Y. Minhas R, et al. Among authors: erdem ce. Sensors (Basel). 2024 Apr 19;24(8):2625. doi: 10.3390/s24082625. Sensors (Basel). 2024. PMID: 38676243 Free PMC article.

10

Electrospun Nanofibers Loaded with Marigold Extract Based on PVP/HPβCD and PCL/PVP Scaffolds for Wound Healing Applications.

Paczkowska-Walendowska M, Rosiak N, Plech T, Karpiński TM, Miklaszewski A, Witkowska K, Jaskólski M, Erdem C, Cielecka-Piontek J. Paczkowska-Walendowska M, et al. Among authors: erdem c. Materials (Basel). 2024 Apr 10;17(8):1736. doi: 10.3390/ma17081736. Materials (Basel). 2024. PMID: 38673093 Free PMC article.

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