Gyori B - Search Results

1

Integrating multi-omics data reveals function and therapeutic potential of deubiquitinating enzymes.

Doherty LM, Mills CE, Boswell SA, Liu X, Hoyt CT, Gyori B, Buhrlage SJ, Sorger PK. Doherty LM, et al. Among authors: gyori b. Elife. 2022 Jun 23;11:e72879. doi: 10.7554/eLife.72879. Elife. 2022. PMID: 35737447 Free PMC article.

2

From word models to executable models of signaling networks using automated assembly.

Gyori BM, Bachman JA, Subramanian K, Muhlich JL, Galescu L, Sorger PK. Gyori BM, et al. Mol Syst Biol. 2017 Nov 24;13(11):954. doi: 10.15252/msb.20177651. Mol Syst Biol. 2017. PMID: 29175850 Free PMC article.

3

Encoding Growth Factor Identity in the Temporal Dynamics of FOXO3 under the Combinatorial Control of ERK and AKT Kinases.

Sampattavanich S, Steiert B, Kramer BA, Gyori BM, Albeck JG, Sorger PK. Sampattavanich S, et al. Among authors: gyori bm. Cell Syst. 2018 Jun 27;6(6):664-678.e9. doi: 10.1016/j.cels.2018.05.004. Epub 2018 Jun 6. Cell Syst. 2018. PMID: 29886111 Free PMC article.

4

FamPlex: a resource for entity recognition and relationship resolution of human protein families and complexes in biomedical text mining.

Bachman JA, Gyori BM, Sorger PK. Bachman JA, et al. BMC Bioinformatics. 2018 Jun 28;19(1):248. doi: 10.1186/s12859-018-2211-5. BMC Bioinformatics. 2018. PMID: 29954318 Free PMC article.

5

INDRA-IPM: interactive pathway modeling using natural language with automated assembly.

Todorov PV, Gyori BM, Bachman JA, Sorger PK. Todorov PV, et al. Bioinformatics. 2019 Nov 1;35(21):4501-4503. doi: 10.1093/bioinformatics/btz289. Bioinformatics. 2019. PMID: 31070726 Free PMC article.

6

Re-curation and rational enrichment of knowledge graphs in Biological Expression Language.

Hoyt CT, Domingo-Fernández D, Aldisi R, Xu L, Kolpeja K, Spalek S, Wollert E, Bachman J, Gyori BM, Greene P, Hofmann-Apitius M. Hoyt CT, et al. Database (Oxford). 2019 Jan 1;2019:baz068. doi: 10.1093/database/baz068. Database (Oxford). 2019. PMID: 31225582 Free PMC article.

7

GeneWalk identifies relevant gene functions for a biological context using network representation learning.

Ietswaart R, Gyori BM, Bachman JA, Sorger PK, Churchman LS. Ietswaart R, et al. Genome Biol. 2021 Feb 2;22(1):55. doi: 10.1186/s13059-021-02264-8. Genome Biol. 2021. PMID: 33526072 Free PMC article.

8

STonKGs: a sophisticated transformer trained on biomedical text and knowledge graphs.

Balabin H, Hoyt CT, Birkenbihl C, Gyori BM, Bachman J, Kodamullil AT, Plöger PG, Hofmann-Apitius M, Domingo-Fernández D. Balabin H, et al. Bioinformatics. 2022 Mar 4;38(6):1648-1656. doi: 10.1093/bioinformatics/btac001. Bioinformatics. 2022. PMID: 34986221 Free PMC article.

9

PyBioPAX: biological pathway exchange in Python.

Gyori BM, Hoyt CT. Gyori BM, et al. J Open Source Softw. 2022;7(71):4136. doi: 10.21105/joss.04136. Epub 2022 Mar 11. J Open Source Softw. 2022. PMID: 36071952 Free PMC article. No abstract available.

10

Unifying the identification of biomedical entities with the Bioregistry.

Hoyt CT, Balk M, Callahan TJ, Domingo-Fernández D, Haendel MA, Hegde HB, Himmelstein DS, Karis K, Kunze J, Lubiana T, Matentzoglu N, McMurry J, Moxon S, Mungall CJ, Rutz A, Unni DR, Willighagen E, Winston D, Gyori BM. Hoyt CT, et al. Among authors: gyori bm. Sci Data. 2022 Nov 19;9(1):714. doi: 10.1038/s41597-022-01807-3. Sci Data. 2022. PMID: 36402838 Free PMC article.

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