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Dissecting the treatment-naive ecosystem of human melanoma brain metastasis.
Biermann J, Melms JC, Amin AD, Wang Y, Caprio LA, Karz A, Tagore S, Barrera I, Ibarra-Arellano MA, Andreatta M, Fullerton BT, Gretarsson KH, Sahu V, Mangipudy VS, Nguyen TTT, Nair A, Rogava M, Ho P, Koch PD, Banu M, Humala N, Mahajan A, Walsh ZH, Shah SB, Vaccaro DH, Caldwell B, Mu M, Wünnemann F, Chazotte M, Berhe S, Luoma AM, Driver J, Ingham M, Khan SA, Rapisuwon S, Slingluff CL Jr, Eigentler T, Röcken M, Carvajal R, Atkins MB, Davies MA, Agustinus A, Bakhoum SF, Azizi E, Siegelin M, Lu C, Carmona SJ, Hibshoosh H, Ribas A, Canoll P, Bruce JN, Bi WL, Agrawal P, Schapiro D, Hernando E, Macosko EZ, Chen F, Schwartz GK, Izar B. Biermann J, et al. Among authors: carmona sj. Cell. 2022 Jul 7;185(14):2591-2608.e30. doi: 10.1016/j.cell.2022.06.007. Cell. 2022. PMID: 35803246 Free PMC article.
UCell: Robust and scalable single-cell gene signature scoring.
Andreatta M, Carmona SJ. Andreatta M, et al. Among authors: carmona sj. Comput Struct Biotechnol J. 2021 Jun 30;19:3796-3798. doi: 10.1016/j.csbj.2021.06.043. eCollection 2021. Comput Struct Biotechnol J. 2021. PMID: 34285779 Free PMC article.
SPICA: Swiss portal for immune cell analysis.
Andreatta M, David FPA, Iseli C, Guex N, Carmona SJ. Andreatta M, et al. Among authors: carmona sj. Nucleic Acids Res. 2022 Jan 7;50(D1):D1109-D1114. doi: 10.1093/nar/gkab1055. Nucleic Acids Res. 2022. PMID: 34747477 Free PMC article.
Semi-supervised integration of single-cell transcriptomics data.
Andreatta M, Hérault L, Gueguen P, Gfeller D, Berenstein AJ, Carmona SJ. Andreatta M, et al. Among authors: carmona sj. Nat Commun. 2024 Jan 29;15(1):872. doi: 10.1038/s41467-024-45240-z. Nat Commun. 2024. PMID: 38287014 Free PMC article.
38 results