Thomson JA - Search Results

1

A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes.

Toh H, Yang C, Formenti G, Raja K, Yan L, Tracey A, Chow W, Howe K, Bergeron LA, Zhang G, Haase B, Mountcastle J, Fedrigo O, Fogg J, Kirilenko B, Munegowda C, Hiller M, Jain A, Kihara D, Rhie A, Phillippy AM, Swanson SA, Jiang P, Clegg DO, Jarvis ED, Thomson JA, Stewart R, Chaisson MJP, Bukhman YV. Toh H, et al. Among authors: thomson ja. BMC Biol. 2022 Nov 8;20(1):245. doi: 10.1186/s12915-022-01427-8. BMC Biol. 2022. PMID: 36344967 Free PMC article.

2

Whole-genome analysis of histone H3 lysine 4 and lysine 27 methylation in human embryonic stem cells.

Pan G, Tian S, Nie J, Yang C, Ruotti V, Wei H, Jonsdottir GA, Stewart R, Thomson JA. Pan G, et al. Among authors: thomson ja. Cell Stem Cell. 2007 Sep 13;1(3):299-312. doi: 10.1016/j.stem.2007.08.003. Cell Stem Cell. 2007. PMID: 18371364 Free article.

3

Optical mapping discerns genome wide DNA methylation profiles.

Ananiev GE, Goldstein S, Runnheim R, Forrest DK, Zhou S, Potamousis K, Churas CP, Bergendahl V, Thomson JA, Schwartz DC. Ananiev GE, et al. Among authors: thomson ja. BMC Mol Biol. 2008 Jul 30;9:68. doi: 10.1186/1471-2199-9-68. BMC Mol Biol. 2008. PMID: 18667073 Free PMC article.

4

Human induced pluripotent stem cells free of vector and transgene sequences.

Yu J, Hu K, Smuga-Otto K, Tian S, Stewart R, Slukvin II, Thomson JA. Yu J, et al. Among authors: thomson ja. Science. 2009 May 8;324(5928):797-801. doi: 10.1126/science.1172482. Epub 2009 Mar 26. Science. 2009. PMID: 19325077 Free PMC article.

5

ProbeMatch: rapid alignment of oligonucleotides to genome allowing both gaps and mismatches.

Kim YJ, Teletia N, Ruotti V, Maher CA, Chinnaiyan AM, Stewart R, Thomson JA, Patel JM. Kim YJ, et al. Among authors: thomson ja. Bioinformatics. 2009 Jun 1;25(11):1424-5. doi: 10.1093/bioinformatics/btp178. Epub 2009 Apr 7. Bioinformatics. 2009. PMID: 19351619 Free PMC article.

6

MicroRNA 92b controls the G1/S checkpoint gene p57 in human embryonic stem cells.

Sengupta S, Nie J, Wagner RJ, Yang C, Stewart R, Thomson JA. Sengupta S, et al. Among authors: thomson ja. Stem Cells. 2009 Jul;27(7):1524-8. doi: 10.1002/stem.84. Stem Cells. 2009. PMID: 19544458

7

RNA-Seq gene expression estimation with read mapping uncertainty.

Li B, Ruotti V, Stewart RM, Thomson JA, Dewey CN. Li B, et al. Among authors: thomson ja. Bioinformatics. 2010 Feb 15;26(4):493-500. doi: 10.1093/bioinformatics/btp692. Epub 2009 Dec 18. Bioinformatics. 2010. PMID: 20022975 Free PMC article.

8

Quantitative selection of DNA aptamers through microfluidic selection and high-throughput sequencing.

Cho M, Xiao Y, Nie J, Stewart R, Csordas AT, Oh SS, Thomson JA, Soh HT. Cho M, et al. Among authors: thomson ja. Proc Natl Acad Sci U S A. 2010 Aug 31;107(35):15373-8. doi: 10.1073/pnas.1009331107. Epub 2010 Aug 12. Proc Natl Acad Sci U S A. 2010. PMID: 20705898 Free PMC article.

9

A mesoderm-derived precursor for mesenchymal stem and endothelial cells.

Vodyanik MA, Yu J, Zhang X, Tian S, Stewart R, Thomson JA, Slukvin II. Vodyanik MA, et al. Among authors: thomson ja. Cell Stem Cell. 2010 Dec 3;7(6):718-29. doi: 10.1016/j.stem.2010.11.011. Cell Stem Cell. 2010. PMID: 21112566 Free PMC article.

10

TF-Cluster: a pipeline for identifying functionally coordinated transcription factors via network decomposition of the shared coexpression connectivity matrix (SCCM).

Nie J, Stewart R, Zhang H, Thomson JA, Ruan F, Cui X, Wei H. Nie J, et al. Among authors: thomson ja. BMC Syst Biol. 2011 Apr 15;5:53. doi: 10.1186/1752-0509-5-53. BMC Syst Biol. 2011. PMID: 21496241 Free PMC article.

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