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A haplotype-resolved genome assembly of the Nile rat facilitates exploration of the genetic basis of diabetes.
Toh H, Yang C, Formenti G, Raja K, Yan L, Tracey A, Chow W, Howe K, Bergeron LA, Zhang G, Haase B, Mountcastle J, Fedrigo O, Fogg J, Kirilenko B, Munegowda C, Hiller M, Jain A, Kihara D, Rhie A, Phillippy AM, Swanson SA, Jiang P, Clegg DO, Jarvis ED, Thomson JA, Stewart R, Chaisson MJP, Bukhman YV. Toh H, et al. Among authors: tracey a. BMC Biol. 2022 Nov 8;20(1):245. doi: 10.1186/s12915-022-01427-8. BMC Biol. 2022. PMID: 36344967 Free PMC article.
The swan genome and transcriptome, it is not all black and white.
Karawita AC, Cheng Y, Chew KY, Challagulla A, Kraus R, Mueller RC, Tong MZW, Hulme KD, Bielefeldt-Ohmann H, Steele LE, Wu M, Sng J, Noye E, Bruxner TJ, Au GG, Lowther S, Blommaert J, Suh A, McCauley AJ, Kaur P, Dudchenko O, Aiden E, Fedrigo O, Formenti G, Mountcastle J, Chow W, Martin FJ, Ogeh DN, Thiaud-Nissen F, Howe K, Tracey A, Smith J, Kuo RI, Renfree MB, Kimura T, Sakoda Y, McDougall M, Spencer HG, Pyne M, Tolf C, Waldenström J, Jarvis ED, Baker ML, Burt DW, Short KR. Karawita AC, et al. Among authors: tracey a. Genome Biol. 2023 Jan 23;24(1):13. doi: 10.1186/s13059-022-02838-0. Genome Biol. 2023. PMID: 36683094 Free PMC article.
A high-quality reference genome for the critically endangered Aeolian wall lizard, Podarcis raffonei.
Gabrielli M, Benazzo A, Biello R, Ancona L, Fuselli S, Iannucci A, Balacco J, Mountcastle J, Tracey A, Ficetola GF, Salvi D, Sollitto M, Fedrigo O, Formenti G, Jarvis ED, Gerdol M, Ciofi C, Trucchi E, Bertorelle G. Gabrielli M, et al. Among authors: tracey a. J Hered. 2023 May 25;114(3):279-285. doi: 10.1093/jhered/esad014. J Hered. 2023. PMID: 36866448
A chromosome-level genome assembly for the Rock Ptarmigan (Lagopus muta).
Squires TE, Rödin-Mörch P, Formenti G, Tracey A, Abueg L, Brajuka N, Jarvis E, Halapi EC, Melsted P, Höglund J, Magnússon KP. Squires TE, et al. Among authors: tracey a. G3 (Bethesda). 2023 Jul 5;13(7):jkad099. doi: 10.1093/g3journal/jkad099. G3 (Bethesda). 2023. PMID: 37141262 Free PMC article.
A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.
de Jong TV, Pan Y, Rastas P, Munro D, Tutaj M, Akil H, Benner C, Chen D, Chitre AS, Chow W, Colonna V, Dalgard CL, Demos WM, Doris PA, Garrison E, Geurts AM, Gunturkun HM, Guryev V, Hourlier T, Howe K, Huang J, Kalbfleisch T, Kim P, Li L, Mahaffey S, Martin FJ, Mohammadi P, Ozel AB, Polesskaya O, Pravenec M, Prins P, Sebat J, Smith JR, Solberg Woods LC, Tabakoff B, Tracey A, Uliano-Silva M, Villani F, Wang H, Sharp BM, Telese F, Jiang Z, Saba L, Wang X, Murphy TD, Palmer AA, Kwitek AE, Dwinell MR, Williams RW, Li JZ, Chen H. de Jong TV, et al. Among authors: tracey a. bioRxiv [Preprint]. 2023 Sep 28:2023.04.13.536694. doi: 10.1101/2023.04.13.536694. bioRxiv. 2023. PMID: 37214860 Free PMC article. Updated. Preprint.
A revamped rat reference genome improves the discovery of genetic diversity in laboratory rats.
de Jong TV, Pan Y, Rastas P, Munro D, Tutaj M, Akil H, Benner C, Chen D, Chitre AS, Chow W, Colonna V, Dalgard CL, Demos WM, Doris PA, Garrison E, Geurts AM, Gunturkun HM, Guryev V, Hourlier T, Howe K, Huang J, Kalbfleisch T, Kim P, Li L, Mahaffey S, Martin FJ, Mohammadi P, Ozel AB, Polesskaya O, Pravenec M, Prins P, Sebat J, Smith JR, Solberg Woods LC, Tabakoff B, Tracey A, Uliano-Silva M, Villani F, Wang H, Sharp BM, Telese F, Jiang Z, Saba L, Wang X, Murphy TD, Palmer AA, Kwitek AE, Dwinell MR, Williams RW, Li JZ, Chen H. de Jong TV, et al. Among authors: tracey a. Cell Genom. 2024 Apr 10;4(4):100527. doi: 10.1016/j.xgen.2024.100527. Epub 2024 Mar 26. Cell Genom. 2024. PMID: 38537634 Free PMC article.
Chromosome-scale Genome Assembly of the Rough Periwinkle Littorina saxatilis.
De Jode A, Faria R, Formenti G, Sims Y, Smith TP, Tracey A, Wood JMD, Zagrodzka ZB, Johannesson K, Butlin RK, Leder EH. De Jode A, et al. Among authors: tracey a. Genome Biol Evol. 2024 Apr 2;16(4):evae076. doi: 10.1093/gbe/evae076. Genome Biol Evol. 2024. PMID: 38584387 Free PMC article.
Fourth Report on Chicken Genes and Chromosomes 2022.
Smith J, Alfieri JM, Anthony N, Arensburger P, Athrey GN, Balacco J, Balic A, Bardou P, Barela P, Bigot Y, Blackmon H, Borodin PM, Carroll R, Casono MC, Charles M, Cheng H, Chiodi M, Cigan L, Coghill LM, Crooijmans R, Das N, Davey S, Davidian A, Degalez F, Dekkers JM, Derks M, Diack AB, Djikeng A, Drechsler Y, Dyomin A, Fedrigo O, Fiddaman SR, Formenti G, Frantz LAF, Fulton JE, Gaginskaya E, Galkina S, Gallardo RA, Geibel J, Gheyas AA, Godinez CJP, Goodell A, Graves JAM, Griffin DK, Haase B, Han JL, Hanotte O, Henderson LJ, Hou ZC, Howe K, Huynh L, Ilatsia E, Jarvis ED, Johnson SM, Kaufman J, Kelly T, Kemp S, Kern C, Keroack JH, Klopp C, Lagarrigue S, Lamont SJ, Lange M, Lanke A, Larkin DM, Larson G, Layos JKN, Lebrasseur O, Malinovskaya LP, Martin RJ, Martin Cerezo ML, Mason AS, McCarthy FM, McGrew MJ, Mountcastle J, Muhonja CK, Muir W, Muret K, Murphy TD, Ng'ang'a I, Nishibori M, O'Connor RE, Ogugo M, Okimoto R, Ouko O, Patel HR, Perini F, Pigozzi MI, Potter KC, Price PD, Reimer C, Rice ES, Rocos N, Rogers TF, Saelao P, Schauer J, Schnabel RD, Schneider VA, Simianer H, Smith A, Stevens MP, Stiers K, Tiambo CK, Tixier-Boichard M, Torgasheva AA, Tracey A, Tregaskes CA, Verv… See abstract for full author list ➔ Smith J, et al. Among authors: tracey a. Cytogenet Genome Res. 2022;162(8-9):405-528. doi: 10.1159/000529376. Epub 2023 Jan 30. Cytogenet Genome Res. 2022. PMID: 36716736 Free article. Review. No abstract available.
NCTC3000: a century of bacterial strain collecting leads to a rich genomic data resource.
Dicks J, Fazal MA, Oliver K, Grayson NE, Turnbull JD, Bane E, Burnett E, Deheer-Graham A, Holroyd N, Kaushal D, Keane J, Langridge G, Lomax J, McGregor H, Picton S, Quail M, Singh D, Tracey A, Korlach J, Russell JE, Alexander S, Parkhill J. Dicks J, et al. Among authors: tracey a. Microb Genom. 2023 May;9(5):mgen000976. doi: 10.1099/mgen.0.000976. Microb Genom. 2023. PMID: 37194944 Free PMC article.
157 results