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Introducing the Bacterial and Viral Bioinformatics Resource Center (BV-BRC): a resource combining PATRIC, IRD and ViPR.
Nucleic Acids Res. 2023 Jan 6;51(D1):D678-D689. doi: 10.1093/nar/gkac1003.
Nucleic Acids Res. 2023.
PMID: 36350631
Free PMC article.
A machine learning-based service for estimating quality of genomes using PATRIC.
Parrello B, Butler R, Chlenski P, Olson R, Overbeek J, Pusch GD, Vonstein V, Overbeek R.
Parrello B, et al.
BMC Bioinformatics. 2019 Oct 3;20(1):486. doi: 10.1186/s12859-019-3068-y.
BMC Bioinformatics. 2019.
PMID: 31581946
Free PMC article.
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The PATRIC Bioinformatics Resource Center: expanding data and analysis capabilities.
Davis JJ, Wattam AR, Aziz RK, Brettin T, Butler R, Butler RM, Chlenski P, Conrad N, Dickerman A, Dietrich EM, Gabbard JL, Gerdes S, Guard A, Kenyon RW, Machi D, Mao C, Murphy-Olson D, Nguyen M, Nordberg EK, Olsen GJ, Olson RD, Overbeek JC, Overbeek R, Parrello B, Pusch GD, Shukla M, Thomas C, VanOeffelen M, Vonstein V, Warren AS, Xia F, Xie D, Yoo H, Stevens R.
Davis JJ, et al. Among authors: overbeek jc.
Nucleic Acids Res. 2020 Jan 8;48(D1):D606-D612. doi: 10.1093/nar/gkz943.
Nucleic Acids Res. 2020.
PMID: 31667520
Free PMC article.
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Classification of bacterial plasmid and chromosome derived sequences using machine learning.
Zou X, Nguyen M, Overbeek J, Cao B, Davis JJ.
Zou X, et al.
PLoS One. 2022 Dec 16;17(12):e0279280. doi: 10.1371/journal.pone.0279280. eCollection 2022.
PLoS One. 2022.
PMID: 36525447
Free PMC article.
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Deep learning methods for drug response prediction in cancer: Predominant and emerging trends.
Partin A, Brettin TS, Zhu Y, Narykov O, Clyde A, Overbeek J, Stevens RL.
Partin A, et al.
Front Med (Lausanne). 2023 Feb 15;10:1086097. doi: 10.3389/fmed.2023.1086097. eCollection 2023.
Front Med (Lausanne). 2023.
PMID: 36873878
Free PMC article.
Review.
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