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MIBiG 3.0: a community-driven effort to annotate experimentally validated biosynthetic gene clusters.
Nucleic Acids Res. 2023 Jan 6;51(D1):D603-D610. doi: 10.1093/nar/gkac1049.
Nucleic Acids Res. 2023.
PMID: 36399496
Free PMC article.
Comprehensive Large-Scale Integrative Analysis of Omics Data To Accelerate Specialized Metabolite Discovery.
Louwen JJR, van der Hooft JJJ.
Louwen JJR, et al.
mSystems. 2021 Aug 31;6(4):e0072621. doi: 10.1128/mSystems.00726-21. Epub 2021 Aug 24.
mSystems. 2021.
PMID: 34427506
Free PMC article.
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Good practices and recommendations for using and benchmarking computational metabolomics metabolite annotation tools.
de Jonge NF, Mildau K, Meijer D, Louwen JJR, Bueschl C, Huber F, van der Hooft JJJ.
de Jonge NF, et al. Among authors: louwen jjr.
Metabolomics. 2022 Dec 5;18(12):103. doi: 10.1007/s11306-022-01963-y.
Metabolomics. 2022.
PMID: 36469190
Free PMC article.
Review.
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Enhanced correlation-based linking of biosynthetic gene clusters to their metabolic products through chemical class matching.
Louwen JJR, Medema MH, van der Hooft JJJ.
Louwen JJR, et al.
Microbiome. 2023 Jan 23;11(1):13. doi: 10.1186/s40168-022-01444-3.
Microbiome. 2023.
PMID: 36691088
Free PMC article.
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NPOmix: A machine learning classifier to connect mass spectrometry fragmentation data to biosynthetic gene clusters.
Leão TF, Wang M, da Silva R, Gurevich A, Bauermeister A, Gomes PWP, Brejnrod A, Glukhov E, Aron AT, Louwen JJR, Kim HW, Reher R, Fiore MF, van der Hooft JJJ, Gerwick L, Gerwick WH, Bandeira N, Dorrestein PC.
Leão TF, et al. Among authors: louwen jjr.
PNAS Nexus. 2022 Nov 16;1(5):pgac257. doi: 10.1093/pnasnexus/pgac257. eCollection 2022 Nov.
PNAS Nexus. 2022.
PMID: 36712343
Free PMC article.
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iPRESTO: Automated discovery of biosynthetic sub-clusters linked to specific natural product substructures.
Louwen JJR, Kautsar SA, van der Burg S, Medema MH, van der Hooft JJJ.
Louwen JJR, et al.
PLoS Comput Biol. 2023 Feb 9;19(2):e1010462. doi: 10.1371/journal.pcbi.1010462. eCollection 2023 Feb.
PLoS Comput Biol. 2023.
PMID: 36758069
Free PMC article.
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MS2Query: reliable and scalable MS2 mass spectra-based analogue search.
de Jonge NF, Louwen JJR, Chekmeneva E, Camuzeaux S, Vermeir FJ, Jansen RS, Huber F, van der Hooft JJJ.
de Jonge NF, et al. Among authors: louwen jjr.
Nat Commun. 2023 Mar 29;14(1):1752. doi: 10.1038/s41467-023-37446-4.
Nat Commun. 2023.
PMID: 36990978
Free PMC article.
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