Brooks AN - Search Results

1

Disrupting the ArcA Regulatory Network Amplifies the Fitness Cost of Tetracycline Resistance in Escherichia coli.

Arrieta-Ortiz ML, Pan M, Kaur A, Pepper-Tunick E, Srinivas V, Dash A, Immanuel SRC, Brooks AN, Shepherd TR, Baliga NS. Arrieta-Ortiz ML, et al. Among authors: brooks an. mSystems. 2023 Feb 23;8(1):e0090422. doi: 10.1128/msystems.00904-22. Epub 2022 Dec 20. mSystems. 2023. PMID: 36537814 Free PMC article.

2

Adaptation of cells to new environments.

Brooks AN, Turkarslan S, Beer KD, Lo FY, Baliga NS. Brooks AN, et al. Wiley Interdiscip Rev Syst Biol Med. 2011 Sep-Oct;3(5):544-61. doi: 10.1002/wsbm.136. Epub 2010 Dec 31. Wiley Interdiscip Rev Syst Biol Med. 2011. PMID: 21197660 Free PMC article. Review.

3

A system-level model for the microbial regulatory genome.

Brooks AN, Reiss DJ, Allard A, Wu WJ, Salvanha DM, Plaisier CL, Chandrasekaran S, Pan M, Kaur A, Baliga NS. Brooks AN, et al. Mol Syst Biol. 2014 Jul 15;10(7):740. doi: 10.15252/msb.20145160. Mol Syst Biol. 2014. PMID: 25028489 Free PMC article.

4

Evolution of context dependent regulation by expansion of feast/famine regulatory proteins.

Plaisier CL, Lo FY, Ashworth J, Brooks AN, Beer KD, Kaur A, Pan M, Reiss DJ, Facciotti MT, Baliga NS. Plaisier CL, et al. Among authors: brooks an. BMC Syst Biol. 2014 Nov 14;8:122. doi: 10.1186/s12918-014-0122-2. BMC Syst Biol. 2014. PMID: 25394904 Free PMC article.

5

Data-driven integration of genome-scale regulatory and metabolic network models.

Imam S, Schäuble S, Brooks AN, Baliga NS, Price ND. Imam S, et al. Among authors: brooks an. Front Microbiol. 2015 May 5;6:409. doi: 10.3389/fmicb.2015.00409. eCollection 2015. Front Microbiol. 2015. PMID: 25999934 Free PMC article. Review.

6

MtrA modulates Mycobacterium tuberculosis cell division in host microenvironments to mediate intrinsic resistance and drug tolerance.

Peterson EJR, Brooks AN, Reiss DJ, Kaur A, Do J, Pan M, Wu WJ, Morrison R, Srinivas V, Carter W, Arrieta-Ortiz ML, Ruiz RA, Bhatt A, Baliga NS. Peterson EJR, et al. Among authors: brooks an. Cell Rep. 2023 Aug 29;42(8):112875. doi: 10.1016/j.celrep.2023.112875. Epub 2023 Aug 4. Cell Rep. 2023. PMID: 37542718 Free PMC article.

7

Deep mutational scanning of essential bacterial proteins can guide antibiotic development.

Dewachter L, Brooks AN, Noon K, Cialek C, Clark-ElSayed A, Schalck T, Krishnamurthy N, Versées W, Vranken W, Michiels J. Dewachter L, et al. Among authors: brooks an. Nat Commun. 2023 Jan 16;14(1):241. doi: 10.1038/s41467-023-35940-3. Nat Commun. 2023. PMID: 36646716 Free PMC article.

8

Macromolecular networks and intelligence in microorganisms.

Westerhoff HV, Brooks AN, Simeonidis E, García-Contreras R, He F, Boogerd FC, Jackson VJ, Goncharuk V, Kolodkin A. Westerhoff HV, et al. Among authors: brooks an. Front Microbiol. 2014 Jul 22;5:379. doi: 10.3389/fmicb.2014.00379. eCollection 2014. Front Microbiol. 2014. PMID: 25101076 Free PMC article.

9

Author Correction: Deep mutational scanning of essential bacterial proteins can guide antibiotic development.

Dewachter L, Brooks AN, Noon K, Cialek C, Clark-ElSayed A, Schalck T, Krishnamurthy N, Versées W, Vranken W, Michiels J. Dewachter L, et al. Among authors: brooks an. Nat Commun. 2023 Feb 6;14(1):657. doi: 10.1038/s41467-023-36287-5. Nat Commun. 2023. PMID: 36746954 Free PMC article. No abstract available.

10

Transcriptional neighborhoods regulate transcript isoform lengths and expression levels.

Brooks AN, Hughes AL, Clauder-Münster S, Mitchell LA, Boeke JD, Steinmetz LM. Brooks AN, et al. Science. 2022 Mar 4;375(6584):1000-1005. doi: 10.1126/science.abg0162. Epub 2022 Mar 3. Science. 2022. PMID: 35239377 Free PMC article.

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