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Oral mucosal breaks trigger anti-citrullinated bacterial and human protein antibody responses in rheumatoid arthritis.
Brewer RC, Lanz TV, Hale CR, Sepich-Poore GD, Martino C, Swafford AD, Carroll TS, Kongpachith S, Blum LK, Elliott SE, Blachere NE, Parveen S, Fak J, Yao V, Troyanskaya O, Frank MO, Bloom MS, Jahanbani S, Gomez AM, Iyer R, Ramadoss NS, Sharpe O, Chandrasekaran S, Kelmenson LB, Wang Q, Wong H, Torres HL, Wiesen M, Graves DT, Deane KD, Holers VM, Knight R, Darnell RB, Robinson WH, Orange DE. Brewer RC, et al. Among authors: martino c. Sci Transl Med. 2023 Feb 22;15(684):eabq8476. doi: 10.1126/scitranslmed.abq8476. Epub 2023 Feb 22. Sci Transl Med. 2023. PMID: 36812347 Free PMC article.
Engineering the microbiome for animal health and conservation.
Jin Song S, Woodhams DC, Martino C, Allaband C, Mu A, Javorschi-Miller-Montgomery S, Suchodolski JS, Knight R. Jin Song S, et al. Among authors: martino c. Exp Biol Med (Maywood). 2019 Apr;244(6):494-504. doi: 10.1177/1535370219830075. Epub 2019 Feb 18. Exp Biol Med (Maywood). 2019. PMID: 30776908 Free PMC article. Review.
Visualizing 'omic feature rankings and log-ratios using Qurro.
Fedarko MW, Martino C, Morton JT, González A, Rahman G, Marotz CA, Minich JJ, Allen EE, Knight R. Fedarko MW, et al. Among authors: martino c. NAR Genom Bioinform. 2020 Jun;2(2):lqaa023. doi: 10.1093/nargab/lqaa023. Epub 2020 Apr 28. NAR Genom Bioinform. 2020. PMID: 32391521 Free PMC article.
Context-aware dimensionality reduction deconvolutes gut microbial community dynamics.
Martino C, Shenhav L, Marotz CA, Armstrong G, McDonald D, Vázquez-Baeza Y, Morton JT, Jiang L, Dominguez-Bello MG, Swafford AD, Halperin E, Knight R. Martino C, et al. Nat Biotechnol. 2021 Feb;39(2):165-168. doi: 10.1038/s41587-020-0660-7. Epub 2020 Aug 31. Nat Biotechnol. 2021. PMID: 32868914 Free PMC article.
A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities.
Shaffer JP, Marotz C, Belda-Ferre P, Martino C, Wandro S, Estaki M, Salido RA, Carpenter CS, Zaramela LS, Minich JJ, Bryant M, Sanders K, Fraraccio S, Ackermann G, Humphrey G, Swafford AD, Miller-Montgomery S, Knight R. Shaffer JP, et al. Among authors: martino c. Biotechniques. 2021 Mar;70(3):149-159. doi: 10.2144/btn-2020-0153. Epub 2021 Jan 29. Biotechniques. 2021. PMID: 33512248 Free PMC article.
EMPress Enables Tree-Guided, Interactive, and Exploratory Analyses of Multi-omic Data Sets.
Cantrell K, Fedarko MW, Rahman G, McDonald D, Yang Y, Zaw T, Gonzalez A, Janssen S, Estaki M, Haiminen N, Beck KL, Zhu Q, Sayyari E, Morton JT, Armstrong G, Tripathi A, Gauglitz JM, Marotz C, Matteson NL, Martino C, Sanders JG, Carrieri AP, Song SJ, Swafford AD, Dorrestein PC, Andersen KG, Parida L, Kim HC, Vázquez-Baeza Y, Knight R. Cantrell K, et al. Among authors: martino c. mSystems. 2021 Mar 16;6(2):e01216-20. doi: 10.1128/mSystems.01216-20. mSystems. 2021. PMID: 33727399 Free PMC article.
Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases.
Armstrong G, Martino C, Morris J, Khaleghi B, Kang J, DeReus J, Zhu Q, Roush D, McDonald D, Gonazlez A, Shaffer JP, Carpenter C, Estaki M, Wandro S, Eilert S, Akel A, Eno J, Curewitz K, Swafford AD, Moshiri N, Rosing T, Knight R. Armstrong G, et al. Among authors: martino c. mSystems. 2022 Apr 26;7(2):e0137821. doi: 10.1128/msystems.01378-21. Epub 2022 Mar 16. mSystems. 2022. PMID: 35293792 Free PMC article.
Early microbial markers of periodontal and cardiometabolic diseases in ORIGINS.
Marotz C, Molinsky R, Martino C, Bohn B, Roy S, Rosenbaum M, Desvarieux M, Yuzefpolskaya M, Paster BJ, Jacobs DR, Colombo PC, Papapanou PN, Knight R, Demmer RT. Marotz C, et al. Among authors: martino c. NPJ Biofilms Microbiomes. 2022 Apr 20;8(1):30. doi: 10.1038/s41522-022-00289-w. NPJ Biofilms Microbiomes. 2022. PMID: 35444197 Free PMC article.
604 results