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Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children.
Mick E, Tsitsiklis A, Kamm J, Kalantar KL, Caldera S, Lyden A, Tan M, Detweiler AM, Neff N, Osborne CM, Williamson KM, Soesanto V, Leroue M, Maddux AB, Simões EA, Carpenter TC, Wagner BD, DeRisi JL, Ambroggio L, Mourani PM, Langelier CR. Mick E, et al. Among authors: derisi jl. J Clin Invest. 2023 Apr 3;133(7):e165904. doi: 10.1172/JCI165904. J Clin Invest. 2023. PMID: 37009900 Free PMC article.
A 2-Gene Host Signature for Improved Accuracy of COVID-19 Diagnosis Agnostic to Viral Variants.
Albright J, Mick E, Sanchez-Guerrero E, Kamm J, Mitchell A, Detweiler AM, Neff N, Tsitsiklis A, Hayakawa Serpa P, Ratnasiri K, Havlir D, Kistler A, DeRisi JL, Pisco AO, Langelier CR. Albright J, et al. Among authors: derisi jl. mSystems. 2023 Feb 23;8(1):e0067122. doi: 10.1128/msystems.00671-22. Epub 2022 Dec 12. mSystems. 2023. PMID: 36507688 Free PMC article.
Whole-genome sequencing rule-out of suspected hospital-onset Rhizopus outbreaks.
Chu VT, Nafees S, Waltari E, McNeil N, Caughell C, Sanchez-Guerrero E, Wang L, Stanley K, Cunningham G, Wong J, Phelps M, Tato CM, Miller S, DeRisi JL, Yokoe DS, Ramirez-Avila L, Langelier CR. Chu VT, et al. Among authors: derisi jl. Infect Control Hosp Epidemiol. 2023 Dec;44(12):2059-2061. doi: 10.1017/ice.2023.85. Epub 2023 Jun 13. Infect Control Hosp Epidemiol. 2023. PMID: 37308466 Free PMC article.
In host evolution of beta lactam resistance during active treatment for Pseudomonas aeruginosa bacteremia.
Spottiswoode N, Hao S, Sanchez-Guerrero E, Detweiler AM, Mekonen H, Neff N, Macmillan H, Schwartz BS, Engel J, DeRisi JL, Miller SA, Langelier CR. Spottiswoode N, et al. Among authors: derisi jl. Front Cell Infect Microbiol. 2023 Aug 30;13:1241608. doi: 10.3389/fcimb.2023.1241608. eCollection 2023. Front Cell Infect Microbiol. 2023. PMID: 37712060 Free PMC article.
Viral Detection by Reverse Transcriptase Polymerase Chain Reaction in Upper Respiratory Tract and Metagenomic RNA Sequencing in Lower Respiratory Tract in Critically Ill Children With Suspected Lower Respiratory Tract Infection.
Osborne CM, Langelier C, Kamm J, Williamson K, Ambroggio L, Reeder RW, Locandro C, Kirk Harris J, Wagner BD, Maddux AB, Caldera S, Lyden A, Soesanto V, Simões EAF, Leroue MK, Carpenter TC, Hall MW, Zuppa AF, Carcillo JA, Meert KL, Pollack MM, McQuillen PS, Notterman DA, DeRisi J, Mourani PM; National Institute for Child Health and Human Development Collaborative Pediatric Critical Care Research Network. Osborne CM, et al. Pediatr Crit Care Med. 2024 Jan 1;25(1):e1-e11. doi: 10.1097/PCC.0000000000003336. Epub 2023 Sep 21. Pediatr Crit Care Med. 2024. PMID: 37732845 Free PMC article.
NFKB2 haploinsufficiency identified via screening for IFN-α2 autoantibodies in children and adolescents hospitalized with SARS-CoV-2-related complications.
Bodansky A, Vazquez SE, Chou J, Novak T, Al-Musa A, Young C, Newhams M, Kucukak S, Zambrano LD, Mitchell A, Wang CY, Moffitt K, Halasa NB, Loftis LL, Schwartz SP, Walker TC, Mack EH, Fitzgerald JC, Gertz SJ, Rowan CM, Irby K, Sanders RC Jr, Kong M, Schuster JE, Staat MA, Zinter MS, Cvijanovich NZ, Tarquinio KM, Coates BM, Flori HR, Dahmer MK, Crandall H, Cullimore ML, Levy ER, Chatani B, Nofziger R; Overcoming COVID-19 Network Study Group Investigators,; Geha RS, DeRisi J, Campbell AP, Anderson M, Randolph AG. Bodansky A, et al. J Allergy Clin Immunol. 2023 Apr;151(4):926-930.e2. doi: 10.1016/j.jaci.2022.11.020. Epub 2022 Dec 9. J Allergy Clin Immunol. 2023. PMID: 36509151 Free PMC article.
Systematic functional interrogation of SARS-CoV-2 host factors using Perturb-seq.
Sunshine S, Puschnik AS, Replogle JM, Laurie MT, Liu J, Zha BS, Nuñez JK, Byrum JR, McMorrow AH, Frieman MB, Winkler J, Qiu X, Rosenberg OS, Leonetti MD, Ye CJ, Weissman JS, DeRisi JL, Hein MY. Sunshine S, et al. Among authors: derisi jl. Nat Commun. 2023 Oct 6;14(1):6245. doi: 10.1038/s41467-023-41788-4. Nat Commun. 2023. PMID: 37803001 Free PMC article.
Autoantigen profiling reveals a shared post-COVID signature in fully recovered and long COVID patients.
Bodansky A, Wang CY, Saxena A, Mitchell A, Kung AF, Takahashi S, Anglin K, Huang B, Hoh R, Lu S, Goldberg SA, Romero J, Tran B, Kirtikar R, Grebe H, So M, Greenhouse B, Durstenfeld MS, Hsue PY, Hellmuth J, Kelly JD, Martin JN, Anderson MS, Deeks SG, Henrich TJ, DeRisi JL, Peluso MJ. Bodansky A, et al. Among authors: derisi jl. JCI Insight. 2023 Jun 8;8(11):e169515. doi: 10.1172/jci.insight.169515. JCI Insight. 2023. PMID: 37288661 Free PMC article.
303 results