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Integrated host/microbe metagenomics enables accurate lower respiratory tract infection diagnosis in critically ill children.
Mick E, Tsitsiklis A, Kamm J, Kalantar KL, Caldera S, Lyden A, Tan M, Detweiler AM, Neff N, Osborne CM, Williamson KM, Soesanto V, Leroue M, Maddux AB, Simões EA, Carpenter TC, Wagner BD, DeRisi JL, Ambroggio L, Mourani PM, Langelier CR. Mick E, et al. Among authors: kamm j. J Clin Invest. 2023 Apr 3;133(7):e165904. doi: 10.1172/JCI165904. J Clin Invest. 2023. PMID: 37009900 Free PMC article.
Decoding coalescent hidden Markov models in linear time.
Harris K, Sheehan S, Kamm JA, Song YS. Harris K, et al. Res Comput Mol Biol. 2014;8394:100-114. doi: 10.1007/978-3-319-05269-4_8. Res Comput Mol Biol. 2014. PMID: 25340178 Free PMC article.
The first horse herders and the impact of early Bronze Age steppe expansions into Asia.
de Barros Damgaard P, Martiniano R, Kamm J, Moreno-Mayar JV, Kroonen G, Peyrot M, Barjamovic G, Rasmussen S, Zacho C, Baimukhanov N, Zaibert V, Merz V, Biddanda A, Merz I, Loman V, Evdokimov V, Usmanova E, Hemphill B, Seguin-Orlando A, Yediay FE, Ullah I, Sjögren KG, Iversen KH, Choin J, de la Fuente C, Ilardo M, Schroeder H, Moiseyev V, Gromov A, Polyakov A, Omura S, Senyurt SY, Ahmad H, McKenzie C, Margaryan A, Hameed A, Samad A, Gul N, Khokhar MH, Goriunova OI, Bazaliiskii VI, Novembre J, Weber AW, Orlando L, Allentoft ME, Nielsen R, Kristiansen K, Sikora M, Outram AK, Durbin R, Willerslev E. de Barros Damgaard P, et al. Among authors: kamm j. Science. 2018 Jun 29;360(6396):eaar7711. doi: 10.1126/science.aar7711. Epub 2018 May 9. Science. 2018. PMID: 29743352 Free PMC article.
The Site Frequency Spectrum for General Coalescents.
Spence JP, Kamm JA, Song YS. Spence JP, et al. Genetics. 2016 Apr;202(4):1549-61. doi: 10.1534/genetics.115.184101. Epub 2016 Feb 16. Genetics. 2016. PMID: 26883445 Free PMC article.
Investigating Transfusion-related Sepsis Using Culture-Independent Metagenomic Sequencing.
Crawford E, Kamm J, Miller S, Li LM, Caldera S, Lyden A, Yokoe D, Nichols A, Tran NK, Barnard SE, Conner PM, Nambiar A, Zinter MS, Moayeri M, Serpa PH, Prince BC, Quan J, Sit R, Tan M, Phelps M, Derisi JL, Tato CM, Langelier C. Crawford E, et al. Among authors: kamm j. Clin Infect Dis. 2020 Aug 22;71(5):1179-1185. doi: 10.1093/cid/ciz960. Clin Infect Dis. 2020. PMID: 31563940 Free PMC article.
Upper airway gene expression differentiates COVID-19 from other acute respiratory illnesses and reveals suppression of innate immune responses by SARS-CoV-2.
Mick E, Kamm J, Pisco AO, Ratnasiri K, Babik JM, Calfee CS, Castañeda G, DeRisi JL, Detweiler AM, Hao S, Kangelaris KN, Kumar GR, Li LM, Mann SA, Neff N, Prasad PA, Serpa PH, Shah SJ, Spottiswoode N, Tan M, Christenson SA, Kistler A, Langelier C. Mick E, et al. Among authors: kamm j. medRxiv [Preprint]. 2020 May 19:2020.05.18.20105171. doi: 10.1101/2020.05.18.20105171. medRxiv. 2020. PMID: 32511476 Free PMC article. Updated. Preprint.
Clinical features, diagnostics, and outcomes of patients presenting with acute respiratory illness: a comparison of patients with and without COVID-19.
Shah SJ, Barish PN, Prasad PA, Kistler AL, Neff N, Kamm J, Li LM, Chiu CY, Babick JM, Fang MC, Abe-Jones Y, Alipanah N, Alvarez FN, Botvinnik OB, Davis JM, Castenada GD, Consortium C, Dadasovich RM, Deng X, DeRisi JL, Detweiler AM, Federman S, Haliburton JR, Hao SL, Kerkhoff AD, Kumar R, Malcolm K, Mann SA, Martinez SP, Marya R, Mick E, Mwakibete LL, Najafi N, Peluso MJ, Phelps MS, Pisco AO, Ratnasiri K, Rubio LA, Sellas AB, Sherwood KD, Sheu J, Spottiswoode N, Tan M, Yu G, Kangelaris KN, Langelier C. Shah SJ, et al. Among authors: kamm j. medRxiv [Preprint]. 2020 May 6:2020.05.02.20082461. doi: 10.1101/2020.05.02.20082461. medRxiv. 2020. PMID: 32511488 Free PMC article. Preprint.
Complete Genome Sequence of a Novel Coronavirus (SARS-CoV-2) Isolate from Bangladesh.
Saha S, Malaker R, Sajib MSI, Hasanuzzaman M, Rahman H, Ahmed ZB, Islam MS, Islam M, Hooda Y, Ahyong V, Vanaerschot M, Batson J, Hao S, Kamm J, Kistler A, Tato CM, DeRisi JL, Saha SK. Saha S, et al. Among authors: kamm j. Microbiol Resour Announc. 2020 Jun 11;9(24):e00568-20. doi: 10.1128/MRA.00568-20. Microbiol Resour Announc. 2020. PMID: 32527780 Free PMC article.
88 results