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De novo design of protein interactions with learned surface fingerprints.
Nature. 2023 May;617(7959):176-184. doi: 10.1038/s41586-023-05993-x. Epub 2023 Apr 26.
Nature. 2023.
PMID: 37100904
Free PMC article.
rstoolbox - a Python library for large-scale analysis of computational protein design data and structural bioinformatics.
Bonet J, Harteveld Z, Sesterhenn F, Scheck A, Correia BE.
Bonet J, et al. Among authors: harteveld z.
BMC Bioinformatics. 2019 May 15;20(1):240. doi: 10.1186/s12859-019-2796-3.
BMC Bioinformatics. 2019.
PMID: 31092198
Free PMC article.
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Computational design of anti-CRISPR proteins with improved inhibition potency.
Mathony J, Harteveld Z, Schmelas C, Upmeier Zu Belzen J, Aschenbrenner S, Sun W, Hoffmann MD, Stengl C, Scheck A, Georgeon S, Rosset S, Wang Y, Grimm D, Eils R, Correia BE, Niopek D.
Mathony J, et al. Among authors: harteveld z.
Nat Chem Biol. 2020 Jul;16(7):725-730. doi: 10.1038/s41589-020-0518-9. Epub 2020 Apr 13.
Nat Chem Biol. 2020.
PMID: 32284602
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A generic framework for hierarchical de novo protein design.
Harteveld Z, Bonet J, Rosset S, Yang C, Sesterhenn F, Correia BE.
Harteveld Z, et al.
Proc Natl Acad Sci U S A. 2022 Oct 25;119(43):e2206111119. doi: 10.1073/pnas.2206111119. Epub 2022 Oct 17.
Proc Natl Acad Sci U S A. 2022.
PMID: 36252041
Free PMC article.
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A Rosetta-based protein design protocol converging to natural sequences.
Sormani G, Harteveld Z, Rosset S, Correia B, Laio A.
Sormani G, et al. Among authors: harteveld z.
J Chem Phys. 2021 Feb 21;154(7):074114. doi: 10.1063/5.0039240.
J Chem Phys. 2021.
PMID: 33607903
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Engineered anti-CRISPR proteins for optogenetic control of CRISPR-Cas9.
Bubeck F, Hoffmann MD, Harteveld Z, Aschenbrenner S, Bietz A, Waldhauer MC, Börner K, Fakhiri J, Schmelas C, Dietz L, Grimm D, Correia BE, Eils R, Niopek D.
Bubeck F, et al. Among authors: harteveld z.
Nat Methods. 2018 Nov;15(11):924-927. doi: 10.1038/s41592-018-0178-9. Epub 2018 Oct 30.
Nat Methods. 2018.
PMID: 30377362
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Optogenetic control of Neisseria meningitidis Cas9 genome editing using an engineered, light-switchable anti-CRISPR protein.
Hoffmann MD, Mathony J, Upmeier Zu Belzen J, Harteveld Z, Aschenbrenner S, Stengl C, Grimm D, Correia BE, Eils R, Niopek D.
Hoffmann MD, et al. Among authors: harteveld z.
Nucleic Acids Res. 2021 Mar 18;49(5):e29. doi: 10.1093/nar/gkaa1198.
Nucleic Acids Res. 2021.
PMID: 33330940
Free PMC article.
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