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IRIS: Discovery of cancer immunotherapy targets arising from pre-mRNA alternative splicing.
Pan Y, Phillips JW, Zhang BD, Noguchi M, Kutschera E, McLaughlin J, Nesterenko PA, Mao Z, Bangayan NJ, Wang R, Tran W, Yang HT, Wang Y, Xu Y, Obusan MB, Cheng D, Lee AH, Kadash-Edmondson KE, Champhekar A, Puig-Saus C, Ribas A, Prins RM, Seet CS, Crooks GM, Witte ON, Xing Y. Pan Y, et al. Among authors: xing y. Proc Natl Acad Sci U S A. 2023 May 23;120(21):e2221116120. doi: 10.1073/pnas.2221116120. Epub 2023 May 16. Proc Natl Acad Sci U S A. 2023. PMID: 37192158 Free PMC article.
SURVIV for survival analysis of mRNA isoform variation.
Shen S, Wang Y, Wang C, Wu YN, Xing Y. Shen S, et al. Among authors: xing y. Nat Commun. 2016 Jun 9;7:11548. doi: 10.1038/ncomms11548. Nat Commun. 2016. PMID: 27279334 Free PMC article.
rMATS-DVR: rMATS discovery of differential variants in RNA.
Wang J, Pan Y, Shen S, Lin L, Xing Y. Wang J, et al. Among authors: xing y. Bioinformatics. 2017 Jul 15;33(14):2216-2217. doi: 10.1093/bioinformatics/btx128. Bioinformatics. 2017. PMID: 28334241 Free PMC article.
Deep-learning augmented RNA-seq analysis of transcript splicing.
Zhang Z, Pan Z, Ying Y, Xie Z, Adhikari S, Phillips J, Carstens RP, Black DL, Wu Y, Xing Y. Zhang Z, et al. Among authors: xing y. Nat Methods. 2019 Apr;16(4):307-310. doi: 10.1038/s41592-019-0351-9. Epub 2019 Mar 25. Nat Methods. 2019. PMID: 30923373 Free PMC article.
METTL4 is an snRNA m6Am methyltransferase that regulates RNA splicing.
Chen H, Gu L, Orellana EA, Wang Y, Guo J, Liu Q, Wang L, Shen Z, Wu H, Gregory RI, Xing Y, Shi Y. Chen H, et al. Among authors: xing y. Cell Res. 2020 Jun;30(6):544-547. doi: 10.1038/s41422-019-0270-4. Epub 2020 Jan 8. Cell Res. 2020. PMID: 31913360 Free PMC article. No abstract available.
6,075 results