Simon N - Search Results

1

Statistical inference reveals the role of length, GC content, and local sequence in V(D)J nucleotide trimming.

Russell ML, Simon N, Bradley P, Matsen FA 4th. Russell ML, et al. Among authors: simon n. Elife. 2023 May 25;12:e85145. doi: 10.7554/eLife.85145. Elife. 2023. PMID: 37227256 Free PMC article.

2

Survival analysis of DNA mutation motifs with penalized proportional hazards.

Feng J, Shaw DA, Minin VN, Simon N, Matsen FA 4th. Feng J, et al. Among authors: simon n. Ann Appl Stat. 2019 Jun;13(2):1268-1294. doi: 10.1214/18-aoas1233. Epub 2019 Jun 17. Ann Appl Stat. 2019. PMID: 33214798 Free PMC article.

3

An interbacterial DNA deaminase toxin directly mutagenizes surviving target populations.

de Moraes MH, Hsu F, Huang D, Bosch DE, Zeng J, Radey MC, Simon N, Ledvina HE, Frick JP, Wiggins PA, Peterson SB, Mougous JD. de Moraes MH, et al. Among authors: simon n. Elife. 2021 Jan 15;10:e62967. doi: 10.7554/eLife.62967. Elife. 2021. PMID: 33448264 Free PMC article.

4

Combining genotypes and T cell receptor distributions to infer genetic loci determining V(D)J recombination probabilities.

Russell ML, Souquette A, Levine DM, Schattgen SA, Allen EK, Kuan G, Simon N, Balmaseda A, Gordon A, Thomas PG, Matsen FA 4th, Bradley P. Russell ML, et al. Among authors: simon n. Elife. 2022 Mar 22;11:e73475. doi: 10.7554/eLife.73475. Elife. 2022. PMID: 35315770 Free PMC article.

5

ESTIMATION OF CELL LINEAGE TREES BY MAXIMUM-LIKELIHOOD PHYLOGENETICS.

Feng J, Dewitt WS 3rd, McKenna A, Simon N, Willis AD, Matsen FA 4th. Feng J, et al. Among authors: simon n. Ann Appl Stat. 2021 Mar;15(1):343-362. doi: 10.1214/20-aoas1400. Epub 2021 Mar 18. Ann Appl Stat. 2021. PMID: 35990087 Free PMC article.

6

A general framework for inference on algorithm-agnostic variable importance.

Williamson BD, Gilbert PB, Simon NR, Carone M. Williamson BD, et al. J Am Stat Assoc. 2023;118(543):1645-1658. doi: 10.1080/01621459.2021.2003200. Epub 2022 Jan 5. J Am Stat Assoc. 2023. PMID: 37982008 Free PMC article.

7

Marginal Bayesian Posterior Inference using Recurrent Neural Networks with Application to Sequential Models.

Fisher T, Luedtke A, Carone M, Simon N. Fisher T, et al. Among authors: simon n. Stat Sin. 2023 May;33(SI):1507-1532. doi: 10.5705/ss.202020.0348. Stat Sin. 2023. PMID: 37409184 Free PMC article.

8

Inference for multimarker adaptive enrichment trials.

Simon R, Simon N. Simon R, et al. Among authors: simon n. Stat Med. 2017 Nov 20;36(26):4083-4093. doi: 10.1002/sim.7422. Epub 2017 Aug 10. Stat Med. 2017. PMID: 28795420 Free PMC article.

9

Convex Regression with Interpretable Sharp Partitions.

Petersen A, Simon N, Witten D. Petersen A, et al. Among authors: simon n. J Mach Learn Res. 2016 Jun;17:94. J Mach Learn Res. 2016. PMID: 27635120 Free PMC article.

10

Prediction of VRC01 neutralization sensitivity by HIV-1 gp160 sequence features.

Magaret CA, Benkeser DC, Williamson BD, Borate BR, Carpp LN, Georgiev IS, Setliff I, Dingens AS, Simon N, Carone M, Simpkins C, Montefiori D, Alter G, Yu WH, Juraska M, Edlefsen PT, Karuna S, Mgodi NM, Edugupanti S, Gilbert PB. Magaret CA, et al. Among authors: simon n. PLoS Comput Biol. 2019 Apr 1;15(4):e1006952. doi: 10.1371/journal.pcbi.1006952. eCollection 2019 Apr. PLoS Comput Biol. 2019. PMID: 30933973 Free PMC article.

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