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The ENCODE4 long-read RNA-seq collection reveals distinct classes of transcript structure diversity.
Reese F, Williams B, Balderrama-Gutierrez G, Wyman D, Çelik MH, Rebboah E, Rezaie N, Trout D, Razavi-Mohseni M, Jiang Y, Borsari B, Morabito S, Liang HY, McGill CJ, Rahmanian S, Sakr J, Jiang S, Zeng W, Carvalho K, Weimer AK, Dionne LA, McShane A, Bedi K, Elhajjajy SI, Upchurch S, Jou J, Youngworth I, Gabdank I, Sud P, Jolanki O, Strattan JS, Kagda MS, Snyder MP, Hitz BC, Moore JE, Weng Z, Bennett D, Reinholdt L, Ljungman M, Beer MA, Gerstein MB, Pachter L, Guigó R, Wold BJ, Mortazavi A. Reese F, et al. Among authors: pachter l. bioRxiv [Preprint]. 2023 May 16:2023.05.15.540865. doi: 10.1101/2023.05.15.540865. bioRxiv. 2023. PMID: 37292896 Free PMC article. Preprint.
The telegraph process is not a subordinator.
Gorin G, Pachter L. Gorin G, et al. Among authors: pachter l. bioRxiv [Preprint]. 2023 Jan 18:2023.01.17.524309. doi: 10.1101/2023.01.17.524309. bioRxiv. 2023. PMID: 36711462 Free PMC article. Preprint.
A machine-readable specification for genomics assays.
Booeshaghi AS, Chen X, Pachter L. Booeshaghi AS, et al. Among authors: pachter l. bioRxiv [Preprint]. 2023 Jul 18:2023.03.17.533215. doi: 10.1101/2023.03.17.533215. bioRxiv. 2023. PMID: 36993635 Free PMC article. Updated. Preprint.
Universal preprocessing of single-cell genomics data.
Booeshaghi AS, Sullivan DK, Pachter L. Booeshaghi AS, et al. Among authors: pachter l. bioRxiv [Preprint]. 2023 Sep 15:2023.09.14.543267. doi: 10.1101/2023.09.14.543267. bioRxiv. 2023. PMID: 37745572 Free PMC article. Preprint.
244 results