Pinello L - Search Results

1

Integrative dissection of gene regulatory elements at base resolution.

Chen Z, Javed N, Moore M, Wu J, Sun G, Vinyard M, Collins A, Pinello L, Najm FJ, Bernstein BE. Chen Z, et al. Among authors: pinello l. Cell Genom. 2023 Apr 28;3(6):100318. doi: 10.1016/j.xgen.2023.100318. eCollection 2023 Jun 14. Cell Genom. 2023. PMID: 37388913 Free PMC article.

2

Inferring gene expression from ribosomal promoter sequences, a crowdsourcing approach.

Meyer P, Siwo G, Zeevi D, Sharon E, Norel R; DREAM6 Promoter Prediction Consortium; Segal E, Stolovitzky G. Meyer P, et al. Genome Res. 2013 Nov;23(11):1928-37. doi: 10.1101/gr.157420.113. Epub 2013 Aug 15. Genome Res. 2013. PMID: 23950146 Free PMC article.

3

Genome-wide characterization of chromatin binding and nucleosome spacing activity of the nucleosome remodelling ATPase ISWI.

Sala A, Toto M, Pinello L, Gabriele A, Di Benedetto V, Ingrassia AM, Lo Bosco G, Di Gesù V, Giancarlo R, Corona DF. Sala A, et al. Among authors: pinello l. EMBO J. 2011 May 4;30(9):1766-77. doi: 10.1038/emboj.2011.98. Epub 2011 Mar 29. EMBO J. 2011. PMID: 21448136 Free PMC article.

4

A methodology to assess the intrinsic discriminative ability of a distance function and its interplay with clustering algorithms for microarray data analysis.

Giancarlo R, Lo Bosco G, Pinello L, Utro F. Giancarlo R, et al. Among authors: pinello l. BMC Bioinformatics. 2013;14 Suppl 1(Suppl 1):S6. doi: 10.1186/1471-2105-14-S1-S6. Epub 2013 Jan 14. BMC Bioinformatics. 2013. PMID: 23369037 Free PMC article.

5

CRISPR-suppressor scanning reveals a nonenzymatic role of LSD1 in AML.

Vinyard ME, Su C, Siegenfeld AP, Waterbury AL, Freedy AM, Gosavi PM, Park Y, Kwan EE, Senzer BD, Doench JG, Bauer DE, Pinello L, Liau BB. Vinyard ME, et al. Among authors: pinello l. Nat Chem Biol. 2019 May;15(5):529-539. doi: 10.1038/s41589-019-0263-0. Epub 2019 Apr 15. Nat Chem Biol. 2019. PMID: 30992567 Free PMC article.

6

Assessment of computational methods for the analysis of single-cell ATAC-seq data.

Chen H, Lareau C, Andreani T, Vinyard ME, Garcia SP, Clement K, Andrade-Navarro MA, Buenrostro JD, Pinello L. Chen H, et al. Among authors: pinello l. Genome Biol. 2019 Nov 18;20(1):241. doi: 10.1186/s13059-019-1854-5. Genome Biol. 2019. PMID: 31739806 Free PMC article.

7

Parallel Single-Cell RNA-Seq and Genetic Recording Reveals Lineage Decisions in Developing Embryoid Bodies.

Kim IS, Wu J, Rahme GJ, Battaglia S, Dixit A, Gaskell E, Chen H, Pinello L, Bernstein BE. Kim IS, et al. Among authors: pinello l. Cell Rep. 2020 Oct 6;33(1):108222. doi: 10.1016/j.celrep.2020.108222. Cell Rep. 2020. PMID: 33027665 Free PMC article.

8

Epigenetic Alterations in Keratinocyte Carcinoma.

Yao Q, Epstein CB, Banskota S, Issner R, Kim Y, Bernstein BE, Pinello L, Asgari MM. Yao Q, et al. Among authors: pinello l. J Invest Dermatol. 2021 May;141(5):1207-1218. doi: 10.1016/j.jid.2020.10.018. Epub 2020 Nov 16. J Invest Dermatol. 2021. PMID: 33212152 Free PMC article.

9

Current progress and potential opportunities to infer single-cell developmental trajectory and cell fate.

Wang L, Zhang Q, Qin Q, Trasanidis N, Vinyard M, Chen H, Pinello L. Wang L, et al. Among authors: pinello l. Curr Opin Syst Biol. 2021 Jun;26:1-11. doi: 10.1016/j.coisb.2021.03.006. Epub 2021 Mar 26. Curr Opin Syst Biol. 2021. PMID: 33997529 Free PMC article.

10

singlecellVR: Interactive Visualization of Single-Cell Data in Virtual Reality.

Stein DF, Chen H, Vinyard ME, Qin Q, Combs RD, Zhang Q, Pinello L. Stein DF, et al. Among authors: pinello l. Front Genet. 2021 Oct 28;12:764170. doi: 10.3389/fgene.2021.764170. eCollection 2021. Front Genet. 2021. PMID: 34777482 Free PMC article.

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