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A heterogeneous pharmaco-transcriptomic landscape induced by targeting a single oncogenic kinase.
Giglio RM, Hou N, Wyatt A, Hong J, Shi L, Vaikunthan M, Fuchs H, Nima JP, Malinowski SW, Ligon KL, McFaline-Figueroa JR, Yosef N, Azizi E, McFaline-Figueroa JL. Giglio RM, et al. Among authors: mcfaline figueroa jl. bioRxiv [Preprint]. 2024 Apr 10:2024.04.08.587960. doi: 10.1101/2024.04.08.587960. bioRxiv. 2024. PMID: 38645018 Free PMC article. Preprint.
Starfysh integrates spatial transcriptomic and histologic data to reveal heterogeneous tumor-immune hubs.
He S, Jin Y, Nazaret A, Shi L, Chen X, Rampersaud S, Dhillon BS, Valdez I, Friend LE, Fan JL, Park CY, Mintz RL, Lao YH, Carrera D, Fang KW, Mehdi K, Rohde M, McFaline-Figueroa JL, Blei D, Leong KW, Rudensky AY, Plitas G, Azizi E. He S, et al. Among authors: mcfaline figueroa jl. Nat Biotechnol. 2024 Mar 21. doi: 10.1038/s41587-024-02173-8. Online ahead of print. Nat Biotechnol. 2024. PMID: 38514799
Predicting cellular responses to complex perturbations in high-throughput screens.
Lotfollahi M, Klimovskaia Susmelj A, De Donno C, Hetzel L, Ji Y, Ibarra IL, Srivatsan SR, Naghipourfar M, Daza RM, Martin B, Shendure J, McFaline-Figueroa JL, Boyeau P, Wolf FA, Yakubova N, Günnemann S, Trapnell C, Lopez-Paz D, Theis FJ. Lotfollahi M, et al. Among authors: mcfaline figueroa jl. Mol Syst Biol. 2023 Jun 12;19(6):e11517. doi: 10.15252/msb.202211517. Epub 2023 May 8. Mol Syst Biol. 2023. PMID: 37154091 Free PMC article.
High-Capacity Sample Multiplexing for Single Cell Chromatin Accessibility Profiling.
Booth GT, Daza RM, Srivatsan SR, McFaline-Figueroa JL, Gladden RG, Furlan SN, Shendure J, Trapnell C. Booth GT, et al. Among authors: mcfaline figueroa jl. bioRxiv [Preprint]. 2023 Mar 6:2023.03.05.531201. doi: 10.1101/2023.03.05.531201. bioRxiv. 2023. PMID: 36945538 Free PMC article. Updated. Preprint.
26 results