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Systematic assessment of long-read RNA-seq methods for transcript identification and quantification.
Pardo-Palacios FJ, Wang D, Reese F, Diekhans M, Carbonell-Sala S, Williams B, Loveland JE, De María M, Adams MS, Balderrama-Gutierrez G, Behera AK, Gonzalez JM, Hunt T, Lagarde J, Liang CE, Li H, Jerryd Meade M, Moraga Amador DA, Prjibelski AD, Birol I, Bostan H, Brooks AM, Hasan Çelik M, Chen Y, Du MRM, Felton C, Göke J, Hafezqorani S, Herwig R, Kawaji H, Lee J, Liang Li J, Lienhard M, Mikheenko A, Mulligan D, Ming Nip K, Pertea M, Ritchie ME, Sim AD, Tang AD, Kei Wan Y, Wang C, Wong BY, Yang C, Barnes I, Berry A, Capella S, Dhillon N, Fernandez-Gonzalez JM, Ferrández-Peral L, Garcia-Reyero N, Goetz S, Hernández-Ferrer C, Kondratova L, Liu T, Martinez-Martin A, Menor C, Mestre-Tomás J, Mudge JM, Panayotova NG, Paniagua A, Repchevsky D, Rouchka E, Saint-John B, Sapena E, Sheynkman L, Laird Smith M, Suner MM, Takahashi H, Youngworth IA, Carninci P, Denslow ND, Guigó R, Hunter ME, Tilgner HU, Wold BJ, Vollmers C, Frankish A, Fai Au K, Sheynkman GM, Mortazavi A, Conesa A, Brooks AN. Pardo-Palacios FJ, et al. Among authors: wang d, wang c. bioRxiv [Preprint]. 2023 Jul 27:2023.07.25.550582. doi: 10.1101/2023.07.25.550582. bioRxiv. 2023. PMID: 37546854 Free PMC article. Preprint.
Comprehensive characterization of single-cell full-length isoforms in human and mouse with long-read sequencing.
Tian L, Jabbari JS, Thijssen R, Gouil Q, Amarasinghe SL, Voogd O, Kariyawasam H, Du MRM, Schuster J, Wang C, Su S, Dong X, Law CW, Lucattini A, Prawer YDJ, Collar-Fernández C, Chung JD, Naim T, Chan A, Ly CH, Lynch GS, Ryall JG, Anttila CJA, Peng H, Anderson MA, Flensburg C, Majewski I, Roberts AW, Huang DCS, Clark MB, Ritchie ME. Tian L, et al. Among authors: wang c. Genome Biol. 2021 Nov 11;22(1):310. doi: 10.1186/s13059-021-02525-6. Genome Biol. 2021. PMID: 34763716 Free PMC article.
Flexiplex: a versatile demultiplexer and search tool for omics data.
Cheng O, Ling MH, Wang C, Wu S, Ritchie ME, Göke J, Amin N, Davidson NM. Cheng O, et al. Among authors: wang c. Bioinformatics. 2024 Mar 4;40(3):btae102. doi: 10.1093/bioinformatics/btae102. Bioinformatics. 2024. PMID: 38379414 Free PMC article.
Key Challenges in Plant Pathology in the Next Decade.
Wang N, Sundin GW, Fuente L, Cubero J, Tatineni S, Brewer MT, Zeng Q, Bock CH, Cunniffe NJ, Wang C, Candresse T, Chappell T, Coleman JJ, Munkvold G. Wang N, et al. Among authors: wang c. Phytopathology. 2024 May;114(5):837-842. doi: 10.1094/PHYTO-04-24-0137-KC. Epub 2024 May 30. Phytopathology. 2024. PMID: 38815216
Human activities shape global patterns of decomposition rates in rivers.
Tiegs SD, Capps KA, Costello DM, Schmidt JP, Patrick CJ, Follstad Shah JJ, LeRoy CJ; CELLDEX Consortium‡; Acuña V, Albariño R, Allen DC, Alonso C, Andino P, Arango C, Aroviita J, Barbosa MVM, Barmuta LA, Baxter C, Bellinger B, Boyero L, Bragina L, Brown LE, Bruder A, Bruesewitz DA, Burdon F, Callisto M, Camacho A, Canhoto C, Castillo MM, Chauvet E, Clapcott J, Colas F, Colón-Gaud C, Cornut J, Crespo-Pérez V, Cross WF, Culp J, Danger M, Dangles O, de Eyto E, Derry AM, Villanueva VD, Douglas MM, Elosegi A, Encalada AC, Entrekin S, Espinosa R, Ferreira V, Ferriol C, Flanagan KM, Flecker AS, Fleituch T, Frainer A, Friberg N, Frost PC, Garcia EA, García-Lago L, Soto PEG, Gessner MO, Ghate S, Giling DP, Gilmer A, Gonçalves JF Jr, Gonzales RK, Graça MAS, Grace M, Griffiths NA, Grossart HP, Guérold F, Gulis V, Gutiérrez-Fonseca PE, Hepp LU, Higgins S, Hishi T, Huddart J, Hudson J, Imberger M, Iñiguez-Armijos C, Isken MW, Iwata T, Janetski DJ, Kirkwood AE, Koning AA, Kosten S, Kuehn KA, Laudon H, Leavitt PR, Lemes da Silva AL, Leroux S, Lisi PJ, MacKenzie R, Marcarelli AM, Masese FO, McIntyre PB, McKie BG, Medeiros A, Meissner K, Miliša M, Mishra S, Miyake Y, Moerke A, Mombrikotb S, Mooney… See abstract for full author list ➔ Tiegs SD, et al. Among authors: wang cp. Science. 2024 May 30:eadn1262. doi: 10.1126/science.adn1262. Online ahead of print. Science. 2024. PMID: 38815088
Dual Information Enhanced Multiview Attributed Graph Clustering.
Lin JQ, Chen MS, Zhu XR, Wang CD, Zhang H. Lin JQ, et al. Among authors: wang cd. IEEE Trans Neural Netw Learn Syst. 2024 May 30;PP. doi: 10.1109/TNNLS.2024.3401449. Online ahead of print. IEEE Trans Neural Netw Learn Syst. 2024. PMID: 38814767
ER-GET: Emotion Recognition Based on Global ECG Trajectory.
Li Y, Tan R, Lin T, Liu Q, Wang CD, Chen M. Li Y, et al. Among authors: wang cd. IEEE J Biomed Health Inform. 2024 May 30;PP. doi: 10.1109/JBHI.2024.3403188. Online ahead of print. IEEE J Biomed Health Inform. 2024. PMID: 38814766
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