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Viral burden is associated with age, vaccination, and viral variant in a population-representative study of SARS-CoV-2 that accounts for time-since-infection-related sampling bias.
Fryer HR, Golubchik T, Hall M, Fraser C, Hinch R, Ferretti L, Thomson L, Nurtay A, Pellis L, House T, MacIntyre-Cockett G, Trebes A, Buck D, Piazza P, Green A, Lonie LJ, Smith D, Bashton M, Crown M, Nelson A, McCann CM, Adnan Tariq M, Elstob CJ, Nunes Dos Santos R, Richards Z, Xhang X, Hawley J, Lee MR, Carrillo-Barragan P, Chapman I, Harthern-Flint S; COVID-19 Genomics UK (COG-UK) consortium; Bonsall D, Lythgoe KA. Fryer HR, et al. Among authors: bashton m. PLoS Pathog. 2023 Aug 14;19(8):e1011461. doi: 10.1371/journal.ppat.1011461. eCollection 2023 Aug. PLoS Pathog. 2023. PMID: 37578971 Free PMC article.
PROCOGNATE: a cognate ligand domain mapping for enzymes.
Bashton M, Nobeli I, Thornton JM. Bashton M, et al. Nucleic Acids Res. 2008 Jan;36(Database issue):D618-22. doi: 10.1093/nar/gkm611. Epub 2007 Aug 24. Nucleic Acids Res. 2008. PMID: 17720712 Free PMC article.
IKZF1 Deletions with COBL Breakpoints Are Not Driven by RAG-Mediated Recombination Events in Acute Lymphoblastic Leukemia.
Lopes BA, Meyer C, Barbosa TC, Poubel CP, Mansur MB, Duployez N, Bashton M, Harrison CJ, Zur Stadt U, Horstmann M, Pombo-de-Oliveira MS, Palmi C, Cazzaniga G, Venn NC, Sutton R, Alonso CN, Tsaur G, Gupta SK, Bakhshi S, Marschalek R, Emerenciano M. Lopes BA, et al. Among authors: bashton m. Transl Oncol. 2019 May;12(5):726-732. doi: 10.1016/j.tranon.2019.02.002. Epub 2019 Mar 13. Transl Oncol. 2019. PMID: 30877974 Free PMC article.
Minimal methylation classifier (MIMIC): A novel method for derivation and rapid diagnostic detection of disease-associated DNA methylation signatures.
Schwalbe EC, Hicks D, Rafiee G, Bashton M, Gohlke H, Enshaei A, Potluri S, Matthiesen J, Mather M, Taleongpong P, Chaston R, Silmon A, Curtis A, Lindsey JC, Crosier S, Smith AJ, Goschzik T, Doz F, Rutkowski S, Lannering B, Pietsch T, Bailey S, Williamson D, Clifford SC. Schwalbe EC, et al. Among authors: bashton m. Sci Rep. 2017 Oct 18;7(1):13421. doi: 10.1038/s41598-017-13644-1. Sci Rep. 2017. PMID: 29044166 Free PMC article.
Small Molecule Subgraph Detector (SMSD) toolkit.
Rahman SA, Bashton M, Holliday GL, Schrader R, Thornton JM. Rahman SA, et al. Among authors: bashton m. J Cheminform. 2009 Aug 10;1(1):12. doi: 10.1186/1758-2946-1-12. J Cheminform. 2009. PMID: 20298518 Free PMC article.
Structure, function and evolution of multidomain proteins.
Vogel C, Bashton M, Kerrison ND, Chothia C, Teichmann SA. Vogel C, et al. Among authors: bashton m. Curr Opin Struct Biol. 2004 Apr;14(2):208-16. doi: 10.1016/j.sbi.2004.03.011. Curr Opin Struct Biol. 2004. PMID: 15093836 Review.
Cognate ligand domain mapping for enzymes.
Bashton M, Nobeli I, Thornton JM. Bashton M, et al. J Mol Biol. 2006 Dec 8;364(4):836-52. doi: 10.1016/j.jmb.2006.09.041. Epub 2006 Sep 20. J Mol Biol. 2006. PMID: 17034815
Geographical and temporal distribution of SARS-CoV-2 clades in the WHO European Region, January to June 2020.
Alm E, Broberg EK, Connor T, Hodcroft EB, Komissarov AB, Maurer-Stroh S, Melidou A, Neher RA, O'Toole Á, Pereyaslov D; WHO European Region sequencing laboratories and GISAID EpiCoV group; WHO European Region sequencing laboratories and GISAID EpiCoV group*. Alm E, et al. Euro Surveill. 2020 Aug;25(32):2001410. doi: 10.2807/1560-7917.ES.2020.25.32.2001410. Euro Surveill. 2020. PMID: 32794443 Free PMC article.
Evaluating the Effects of SARS-CoV-2 Spike Mutation D614G on Transmissibility and Pathogenicity.
Volz E, Hill V, McCrone JT, Price A, Jorgensen D, O'Toole Á, Southgate J, Johnson R, Jackson B, Nascimento FF, Rey SM, Nicholls SM, Colquhoun RM, da Silva Filipe A, Shepherd J, Pascall DJ, Shah R, Jesudason N, Li K, Jarrett R, Pacchiarini N, Bull M, Geidelberg L, Siveroni I; COG-UK Consortium; Goodfellow I, Loman NJ, Pybus OG, Robertson DL, Thomson EC, Rambaut A, Connor TR. Volz E, et al. Cell. 2021 Jan 7;184(1):64-75.e11. doi: 10.1016/j.cell.2020.11.020. Epub 2020 Nov 19. Cell. 2021. PMID: 33275900 Free PMC article.
58 results