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Community-developed checklists for publishing images and image analyses.
Schmied C, Nelson MS, Avilov S, Bakker GJ, Bertocchi C, Bischof J, Boehm U, Brocher J, Carvalho MT, Chiritescu C, Christopher J, Cimini BA, Conde-Sousa E, Ebner M, Ecker R, Eliceiri K, Fernandez-Rodriguez J, Gaudreault N, Gelman L, Grunwald D, Gu T, Halidi N, Hammer M, Hartley M, Held M, Jug F, Kapoor V, Koksoy AA, Lacoste J, Le Dévédec S, Le Guyader S, Liu P, Martins GG, Mathur A, Miura K, Montero Llopis P, Nitschke R, North A, Parslow AC, Payne-Dwyer A, Plantard L, Ali R, Schroth-Diez B, Schütz L, Scott RT, Seitz A, Selchow O, Sharma VP, Spitaler M, Srinivasan S, Strambio-De-Castillia C, Taatjes D, Tischer C, Jambor HK. Schmied C, et al. Among authors: cimini ba. Nat Methods. 2024 Feb;21(2):170-181. doi: 10.1038/s41592-023-01987-9. Epub 2023 Sep 14. Nat Methods. 2024. PMID: 37710020 Review.
Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl.
Caicedo JC, Goodman A, Karhohs KW, Cimini BA, Ackerman J, Haghighi M, Heng C, Becker T, Doan M, McQuin C, Rohban M, Singh S, Carpenter AE. Caicedo JC, et al. Among authors: cimini ba. Nat Methods. 2019 Dec;16(12):1247-1253. doi: 10.1038/s41592-019-0612-7. Epub 2019 Oct 21. Nat Methods. 2019. PMID: 31636459 Free PMC article.
Open-source deep-learning software for bioimage segmentation.
Lucas AM, Ryder PV, Li B, Cimini BA, Eliceiri KW, Carpenter AE. Lucas AM, et al. Among authors: cimini ba. Mol Biol Cell. 2021 Apr 19;32(9):823-829. doi: 10.1091/mbc.E20-10-0660. Mol Biol Cell. 2021. PMID: 33872058 Free PMC article.
PyImageJ: A library for integrating ImageJ and Python.
Rueden CT, Hiner MC, Evans EL 3rd, Pinkert MA, Lucas AM, Carpenter AE, Cimini BA, Eliceiri KW. Rueden CT, et al. Among authors: cimini ba. Nat Methods. 2022 Nov;19(11):1326-1327. doi: 10.1038/s41592-022-01655-4. Nat Methods. 2022. PMID: 36253645 Free PMC article. No abstract available.
Community-developed checklists for publishing images and image analyses.
Schmied C, Nelson MS, Avilov S, Bakker GJ, Bertocchi C, Bischof J, Boehm U, Brocher J, Carvalho M, Chiritescu C, Christopher J, Cimini BA, Conde-Sousa E, Ebner M, Ecker R, Eliceiri K, Fernandez-Rodriguez J, Gaudreault N, Gelman L, Grunwald D, Gu T, Halidi N, Hammer M, Hartley M, Held M, Jug F, Kapoor V, Koksoy AA, Lacoste J, Dévédec SL, Guyader SL, Liu P, Martins GG, Mathur A, Miura K, Montero Llopis P, Nitschke R, North A, Parslow AC, Payne-Dwyer A, Plantard L, Ali R, Schroth-Diez B, Schütz L, Scott RT, Seitz A, Selchow O, Sharma VP, Spitaler M, Srinivasan S, Strambio-De-Castillia C, Taatjes D, Tischer C, Jambor HK. Schmied C, et al. Among authors: cimini ba. ArXiv [Preprint]. 2023 Sep 14:arXiv:2302.07005v2. ArXiv. 2023. PMID: 36824427 Free PMC article. Updated. Preprint.
Bridging Imaging Users to Imaging Analysis - A community survey.
Sivagurunathan S, Marcotti S, Nelson CJ, Jones ML, Barry DJ, Slater TJA, Eliceiri KW, Cimini BA. Sivagurunathan S, et al. Among authors: cimini ba. bioRxiv [Preprint]. 2023 Jun 5:2023.06.05.543701. doi: 10.1101/2023.06.05.543701. bioRxiv. 2023. PMID: 37333353 Free PMC article. Updated. Preprint.
62 results