Simon MD - Search Results

1

Acetyl-methyllysine marks chromatin at active transcription start sites.

Lu-Culligan WJ, Connor LJ, Xie Y, Ekundayo BE, Rose BT, Machyna M, Pintado-Urbanc AP, Zimmer JT, Vock IW, Bhanu NV, King MC, Garcia BA, Bleichert F, Simon MD. Lu-Culligan WJ, et al. Among authors: simon md. Nature. 2023 Oct;622(7981):173-179. doi: 10.1038/s41586-023-06565-9. Epub 2023 Sep 20. Nature. 2023. PMID: 37731000 Free PMC article.

2

High-resolution Xist binding maps reveal two-step spreading during X-chromosome inactivation.

Simon MD, Pinter SF, Fang R, Sarma K, Rutenberg-Schoenberg M, Bowman SK, Kesner BA, Maier VK, Kingston RE, Lee JT. Simon MD, et al. Nature. 2013 Dec 19;504(7480):465-469. doi: 10.1038/nature12719. Epub 2013 Oct 27. Nature. 2013. PMID: 24162848 Free PMC article.

3

Capture Hybridization Analysis of DNA Targets.

Sexton AN, Machyna M, Simon MD. Sexton AN, et al. Among authors: simon md. Methods Mol Biol. 2016;1480:87-97. doi: 10.1007/978-1-4939-6380-5_8. Methods Mol Biol. 2016. PMID: 27659977

4

Catching RNAs on chromatin using hybridization capture methods.

Machyna M, Simon MD. Machyna M, et al. Among authors: simon md. Brief Funct Genomics. 2018 Mar 1;17(2):96-103. doi: 10.1093/bfgp/elx038. Brief Funct Genomics. 2018. PMID: 29126220 Free PMC article. Review.

5

TimeLapse-seq: adding a temporal dimension to RNA sequencing through nucleoside recoding.

Schofield JA, Duffy EE, Kiefer L, Sullivan MC, Simon MD. Schofield JA, et al. Among authors: simon md. Nat Methods. 2018 Mar;15(3):221-225. doi: 10.1038/nmeth.4582. Epub 2018 Jan 22. Nat Methods. 2018. PMID: 29355846 Free PMC article.

6

Principles and Practices of Hybridization Capture Experiments to Study Long Noncoding RNAs That Act on Chromatin.

Simon MD, Machyna M. Simon MD, et al. Cold Spring Harb Perspect Biol. 2019 Nov 1;11(11):a032276. doi: 10.1101/cshperspect.a032276. Cold Spring Harb Perspect Biol. 2019. PMID: 31676573 Free PMC article. Review.

7

p53 Activates the Long Noncoding RNA Pvt1b to Inhibit Myc and Suppress Tumorigenesis.

Olivero CE, Martínez-Terroba E, Zimmer J, Liao C, Tesfaye E, Hooshdaran N, Schofield JA, Bendor J, Fang D, Simon MD, Zamudio JR, Dimitrova N. Olivero CE, et al. Among authors: simon md. Mol Cell. 2020 Feb 20;77(4):761-774.e8. doi: 10.1016/j.molcel.2019.12.014. Epub 2020 Jan 20. Mol Cell. 2020. PMID: 31973890 Free PMC article.

8

Enhanced nucleotide chemistry and toehold nanotechnology reveals lncRNA spreading on chromatin.

Machyna M, Kiefer L, Simon MD. Machyna M, et al. Among authors: simon md. Nat Struct Mol Biol. 2020 Mar;27(3):297-304. doi: 10.1038/s41594-020-0390-z. Epub 2020 Mar 10. Nat Struct Mol Biol. 2020. PMID: 32157249

9

Author Correction: Enhanced nucleotide chemistry and toehold nanotechnology reveals lncRNA spreading on chromatin.

Machyna M, Kiefer L, Simon MD. Machyna M, et al. Among authors: simon md. Nat Struct Mol Biol. 2020 Apr;27(4):400. doi: 10.1038/s41594-020-0413-9. Nat Struct Mol Biol. 2020. PMID: 32203493

10

Hyperosmotic stress alters the RNA polymerase II interactome and induces readthrough transcription despite widespread transcriptional repression.

Rosa-Mercado NA, Zimmer JT, Apostolidi M, Rinehart J, Simon MD, Steitz JA. Rosa-Mercado NA, et al. Among authors: simon md. Mol Cell. 2021 Feb 4;81(3):502-513.e4. doi: 10.1016/j.molcel.2020.12.002. Epub 2021 Jan 4. Mol Cell. 2021. PMID: 33400923 Free PMC article.

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