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phippery: a software suite for PhIP-Seq data analysis.
Galloway JG, Sung K, Minot SS, Garrett ME, Stoddard CI, Willcox AC, Yaffe ZA, Yucha R, Overbaugh J, Matsen FA. Galloway JG, et al. Among authors: matsen fa. Bioinformatics. 2023 Oct 3;39(10):btad583. doi: 10.1093/bioinformatics/btad583. Bioinformatics. 2023. PMID: 37740324 Free PMC article.
Low-frequency nevirapine resistance at multiple sites may predict treatment failure in infants on nevirapine-based treatment.
Lehman DA, Wamalwa DC, McCoy CO, Matsen FA, Langat A, Chohan BH, Benki-Nugent S, Custers-Allen R, Bushman FD, John-Stewart GC, Overbaugh J. Lehman DA, et al. Among authors: matsen fa. J Acquir Immune Defic Syndr. 2012 Jul 1;60(3):225-33. doi: 10.1097/QAI.0b013e3182515730. J Acquir Immune Defic Syndr. 2012. PMID: 22395670 Free PMC article.
Risk of drug resistance among persons acquiring HIV within a randomized clinical trial of single- or dual-agent preexposure prophylaxis.
Lehman DA, Baeten JM, McCoy CO, Weis JF, Peterson D, Mbara G, Donnell D, Thomas KK, Hendrix CW, Marzinke MA, Frenkel L, Ndase P, Mugo NR, Celum C, Overbaugh J, Matsen FA; Partners PrEP Study Team. Lehman DA, et al. Among authors: matsen fa. J Infect Dis. 2015 Apr 15;211(8):1211-8. doi: 10.1093/infdis/jiu677. Epub 2015 Jan 13. J Infect Dis. 2015. PMID: 25587020 Free PMC article. Clinical Trial.
Development of antibody-dependent cell cytotoxicity function in HIV-1 antibodies.
Doepker LE, Danon S, Harkins E, Ralph DK, Yaffe Z, Garrett ME, Dhar A, Wagner C, Stumpf MM, Arenz D, Williams JA, Jaoko W, Mandaliya K, Lee KK, Matsen FA 4th, Overbaugh JM. Doepker LE, et al. Among authors: matsen fa 4th. Elife. 2021 Jan 11;10:e63444. doi: 10.7554/eLife.63444. Elife. 2021. PMID: 33427196 Free PMC article.
Epitope profiling reveals binding signatures of SARS-CoV-2 immune response in natural infection and cross-reactivity with endemic human CoVs.
Stoddard CI, Galloway J, Chu HY, Shipley MM, Sung K, Itell HL, Wolf CR, Logue JK, Magedson A, Garrett ME, Crawford KHD, Laserson U, Matsen FA 4th, Overbaugh J. Stoddard CI, et al. Among authors: matsen fa 4th. Cell Rep. 2021 May 25;35(8):109164. doi: 10.1016/j.celrep.2021.109164. Epub 2021 May 6. Cell Rep. 2021. PMID: 33991511 Free PMC article.
376 results