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phippery: a software suite for PhIP-Seq data analysis.
Galloway JG, Sung K, Minot SS, Garrett ME, Stoddard CI, Willcox AC, Yaffe ZA, Yucha R, Overbaugh J, Matsen FA. Galloway JG, et al. Among authors: overbaugh j. Bioinformatics. 2023 Oct 3;39(10):btad583. doi: 10.1093/bioinformatics/btad583. Bioinformatics. 2023. PMID: 37740324 Free PMC article.
Low-frequency nevirapine resistance at multiple sites may predict treatment failure in infants on nevirapine-based treatment.
Lehman DA, Wamalwa DC, McCoy CO, Matsen FA, Langat A, Chohan BH, Benki-Nugent S, Custers-Allen R, Bushman FD, John-Stewart GC, Overbaugh J. Lehman DA, et al. Among authors: overbaugh j. J Acquir Immune Defic Syndr. 2012 Jul 1;60(3):225-33. doi: 10.1097/QAI.0b013e3182515730. J Acquir Immune Defic Syndr. 2012. PMID: 22395670 Free PMC article.
Risk of drug resistance among persons acquiring HIV within a randomized clinical trial of single- or dual-agent preexposure prophylaxis.
Lehman DA, Baeten JM, McCoy CO, Weis JF, Peterson D, Mbara G, Donnell D, Thomas KK, Hendrix CW, Marzinke MA, Frenkel L, Ndase P, Mugo NR, Celum C, Overbaugh J, Matsen FA; Partners PrEP Study Team. Lehman DA, et al. Among authors: overbaugh j. J Infect Dis. 2015 Apr 15;211(8):1211-8. doi: 10.1093/infdis/jiu677. Epub 2015 Jan 13. J Infect Dis. 2015. PMID: 25587020 Free PMC article. Clinical Trial.
Identification of HIV gp41-specific antibodies that mediate killing of infected cells.
Williams KL, Stumpf M, Naiman NE, Ding S, Garrett M, Gobillot T, Vézina D, Dusenbury K, Ramadoss NS, Basom R, Kim PS, Finzi A, Overbaugh J. Williams KL, et al. Among authors: overbaugh j. PLoS Pathog. 2019 Feb 19;15(2):e1007572. doi: 10.1371/journal.ppat.1007572. eCollection 2019 Feb. PLoS Pathog. 2019. PMID: 30779811 Free PMC article.
Kappa chain maturation helps drive rapid development of an infant HIV-1 broadly neutralizing antibody lineage.
Simonich CA, Doepker L, Ralph D, Williams JA, Dhar A, Yaffe Z, Gentles L, Small CT, Oliver B, Vigdorovich V, Mangala Prasad V, Nduati R, Sather DN, Lee KK, Matsen Iv FA, Overbaugh J. Simonich CA, et al. Among authors: overbaugh j. Nat Commun. 2019 May 16;10(1):2190. doi: 10.1038/s41467-019-09481-7. Nat Commun. 2019. PMID: 31097697 Free PMC article.
Phage-DMS: A Comprehensive Method for Fine Mapping of Antibody Epitopes.
Garrett ME, Itell HL, Crawford KHD, Basom R, Bloom JD, Overbaugh J. Garrett ME, et al. Among authors: overbaugh j. iScience. 2020 Sep 29;23(10):101622. doi: 10.1016/j.isci.2020.101622. eCollection 2020 Oct 23. iScience. 2020. PMID: 33089110 Free PMC article.
357 results