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Robust and scalable single-molecule protein sequencing with fluorosequencing.
bioRxiv [Preprint]. 2023 Sep 16:2023.09.15.558007. doi: 10.1101/2023.09.15.558007.
bioRxiv. 2023.
PMID: 37745461
Free PMC article.
Preprint.
Estimating error rates for single molecule protein sequencing experiments.
Smith MB, VanderVelden K, Blom T, Stout HD, Mapes JH, Folsom TM, Martin C, Bardo AM, Marcotte EM.
Smith MB, et al.
bioRxiv [Preprint]. 2023 Jul 19:2023.07.18.549591. doi: 10.1101/2023.07.18.549591.
bioRxiv. 2023.
PMID: 37502879
Free PMC article.
Preprint.
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GIANT EMBRYO encodes CYP78A13, required for proper size balance between embryo and endosperm in rice.
Nagasawa N, Hibara K, Heppard EP, Vander Velden KA, Luck S, Beatty M, Nagato Y, Sakai H.
Nagasawa N, et al. Among authors: vander velden ka.
Plant J. 2013 Aug;75(4):592-605. doi: 10.1111/tpj.12223. Epub 2013 May 30.
Plant J. 2013.
PMID: 23621326
Free article.
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SplitTester: software to identify domains responsible for functional divergence in protein family.
Gao X, Vander Velden KA, Voytas DF, Gu X.
Gao X, et al. Among authors: vander velden ka.
BMC Bioinformatics. 2005 Jun 1;6:137. doi: 10.1186/1471-2105-6-137.
BMC Bioinformatics. 2005.
PMID: 15929795
Free PMC article.
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DIVERGE: phylogeny-based analysis for functional-structural divergence of a protein family.
Gu X, Vander Velden K.
Gu X, et al. Among authors: vander velden k.
Bioinformatics. 2002 Mar;18(3):500-1. doi: 10.1093/bioinformatics/18.3.500.
Bioinformatics. 2002.
PMID: 11934757
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The proteome of maize leaves: use of gene sequences and expressed sequence tag data for identification of proteins with peptide mass fingerprints.
Porubleva L, Vander Velden K, Kothari S, Oliver DJ, Chitnis PR.
Porubleva L, et al. Among authors: vander velden k.
Electrophoresis. 2001 May;22(9):1724-38. doi: 10.1002/1522-2683(200105)22:9<1724::AID-ELPS1724>3.0.CO;2-2.
Electrophoresis. 2001.
PMID: 11425228
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