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Survey of white-footed mice in Connecticut, USA reveals low SARS-CoV-2 seroprevalence and infection with divergent betacoronaviruses.
Earnest R, Hahn AM, Feriancek NM, Brandt M, Filler RB, Zhao Z, Breban MI, Vogels CBF, Chen NFG, Koch RT, Porzucek AJ, Sodeinde A, Garbiel A, Keanna C, Litwak H, Stuber HR, Cantoni JL, Pitzer VE, Olarte Castillo XA, Goodman LB, Wilen CB, Linske MA, Williams SC, Grubaugh ND. Earnest R, et al. bioRxiv [Preprint]. 2023 Sep 27:2023.09.22.559030. doi: 10.1101/2023.09.22.559030. bioRxiv. 2023. PMID: 37808797 Free PMC article. Preprint.
An AI-powered patient triage platform for future viral outbreaks using COVID-19 as a disease model.
Charkoftaki G, Aalizadeh R, Santos-Neto A, Tan WY, Davidson EA, Nikolopoulou V, Wang Y, Thompson B, Furnary T, Chen Y, Wunder EA, Coppi A, Schulz W, Iwasaki A, Pierce RW, Cruz CSD, Desir GV, Kaminski N, Farhadian S, Veselkov K, Datta R, Campbell M, Thomaidis NS, Ko AI; Yale IMPACT Study Team; Thompson DC, Vasiliou V. Charkoftaki G, et al. Hum Genomics. 2023 Aug 29;17(1):80. doi: 10.1186/s40246-023-00521-4. Hum Genomics. 2023. PMID: 37641126 Free PMC article.
Method versatility in RNA extraction-free PCR detection of SARS-CoV-2 in saliva samples.
Allicock OM, Yolda-Carr D, Earnest R, Breban MI, Vega N, Ott IM, Kalinich C, Alpert T, Petrone ME, Wyllie AL. Allicock OM, et al. Among authors: earnest r. Prog Biophys Mol Biol. 2023 Sep;182:103-108. doi: 10.1016/j.pbiomolbio.2023.06.004. Epub 2023 Jun 25. Prog Biophys Mol Biol. 2023. PMID: 37369293 Free PMC article.
Accelerated SARS-CoV-2 intrahost evolution leading to distinct genotypes during chronic infection.
Chaguza C, Hahn AM, Petrone ME, Zhou S, Ferguson D, Breban MI, Pham K, Peña-Hernández MA, Castaldi C, Hill V; Yale SARS-CoV-2 Genomic Surveillance Initiative; Schulz W, Swanstrom RI, Roberts SC, Grubaugh ND. Chaguza C, et al. Cell Rep Med. 2023 Feb 21;4(2):100943. doi: 10.1016/j.xcrm.2023.100943. Epub 2023 Jan 27. Cell Rep Med. 2023. PMID: 36791724 Free PMC article.
Lineage abundance estimation for SARS-CoV-2 in wastewater using transcriptome quantification techniques.
Baaijens JA, Zulli A, Ott IM, Nika I, van der Lugt MJ, Petrone ME, Alpert T, Fauver JR, Kalinich CC, Vogels CBF, Breban MI, Duvallet C, McElroy KA, Ghaeli N, Imakaev M, Mckenzie-Bennett MF, Robison K, Plocik A, Schilling R, Pierson M, Littlefield R, Spencer ML, Simen BB; Yale SARS-CoV-2 Genomic Surveillance Initiative; Hanage WP, Grubaugh ND, Peccia J, Baym M. Baaijens JA, et al. Genome Biol. 2022 Nov 8;23(1):236. doi: 10.1186/s13059-022-02805-9. Genome Biol. 2022. PMID: 36348471 Free PMC article.
Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Outbreak at a College With High Coronavirus Disease 2019 (COVID-19) Vaccination Coverage-Connecticut, August 2021-September 2021.
Bart SM, Curtiss CC, Earnest R, Lobe-Costonis R, Peterson H, McWilliams C, Billig K, Hadler JL, Grubaugh ND, Arcelus VJ, Sosa LE. Bart SM, et al. Among authors: earnest r. Clin Infect Dis. 2022 Oct 3;75(Suppl 2):S243-S250. doi: 10.1093/cid/ciac422. Clin Infect Dis. 2022. PMID: 35675696 Free PMC article.
63 results