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Single B cell transcriptomics identifies multiple isotypes of broadly neutralizing antibodies against flaviviruses.
Lubow J, Levoir LM, Ralph DK, Belmont L, Contreras M, Cartwright-Acar CH, Kikawa C, Kannan S, Davidson E, Duran V, Rebellon-Sanchez DE, Sanz AM, Rosso F, Doranz BJ, Einav S, Matsen Iv FA, Goo L. Lubow J, et al. Among authors: matsen iv fa. PLoS Pathog. 2023 Oct 9;19(10):e1011722. doi: 10.1371/journal.ppat.1011722. eCollection 2023 Oct. PLoS Pathog. 2023. PMID: 37812640 Free PMC article.
AIRR Community Standardized Representations for Annotated Immune Repertoires.
Vander Heiden JA, Marquez S, Marthandan N, Bukhari SAC, Busse CE, Corrie B, Hershberg U, Kleinstein SH, Matsen Iv FA, Ralph DK, Rosenfeld AM, Schramm CA; AIRR Community; Christley S, Laserson U. Vander Heiden JA, et al. Among authors: matsen iv fa. Front Immunol. 2018 Sep 28;9:2206. doi: 10.3389/fimmu.2018.02206. eCollection 2018. Front Immunol. 2018. PMID: 30323809 Free PMC article.
Kappa chain maturation helps drive rapid development of an infant HIV-1 broadly neutralizing antibody lineage.
Simonich CA, Doepker L, Ralph D, Williams JA, Dhar A, Yaffe Z, Gentles L, Small CT, Oliver B, Vigdorovich V, Mangala Prasad V, Nduati R, Sather DN, Lee KK, Matsen Iv FA, Overbaugh J. Simonich CA, et al. Among authors: matsen iv fa. Nat Commun. 2019 May 16;10(1):2190. doi: 10.1038/s41467-019-09481-7. Nat Commun. 2019. PMID: 31097697 Free PMC article.
Detailed analysis of antibody responses to SARS-CoV-2 vaccination and infection in macaques.
Willcox AC, Sung K, Garrett ME, Galloway JG, Erasmus JH, Logue JK, Hawman DW, Chu HY, Hasenkrug KJ, Fuller DH, Matsen Iv FA, Overbaugh J. Willcox AC, et al. Among authors: matsen iv fa. PLoS Pathog. 2022 Apr 11;18(4):e1010155. doi: 10.1371/journal.ppat.1010155. eCollection 2022 Apr. PLoS Pathog. 2022. PMID: 35404959 Free PMC article.
Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming.
Ohlin M, Scheepers C, Corcoran M, Lees WD, Busse CE, Bagnara D, Thörnqvist L, Bürckert JP, Jackson KJL, Ralph D, Schramm CA, Marthandan N, Breden F, Scott J, Matsen Iv FA, Greiff V, Yaari G, Kleinstein SH, Christley S, Sherkow JS, Kossida S, Lefranc MP, van Zelm MC, Watson CT, Collins AM. Ohlin M, et al. Among authors: matsen iv fa. Front Immunol. 2019 Mar 18;10:435. doi: 10.3389/fimmu.2019.00435. eCollection 2019. Front Immunol. 2019. PMID: 30936866 Free PMC article. Review.
Dynamics of HIV DNA reservoir seeding in a cohort of superinfected Kenyan women.
Pankau MD, Reeves DB, Harkins E, Ronen K, Jaoko W, Mandaliya K, Graham SM, McClelland RS, Matsen Iv FA, Schiffer JT, Overbaugh J, Lehman DA. Pankau MD, et al. Among authors: matsen iv fa. PLoS Pathog. 2020 Feb 5;16(2):e1008286. doi: 10.1371/journal.ppat.1008286. eCollection 2020 Feb. PLoS Pathog. 2020. PMID: 32023326 Free PMC article. Clinical Trial.
Comparing T cell receptor repertoires using optimal transport.
Olson BJ, Schattgen SA, Thomas PG, Bradley P, Matsen Iv FA. Olson BJ, et al. Among authors: matsen iv fa. PLoS Comput Biol. 2022 Dec 7;18(12):e1010681. doi: 10.1371/journal.pcbi.1010681. eCollection 2022 Dec. PLoS Comput Biol. 2022. PMID: 36476997 Free PMC article.
Reproducibility and Reuse of Adaptive Immune Receptor Repertoire Data.
Breden F, Luning Prak ET, Peters B, Rubelt F, Schramm CA, Busse CE, Vander Heiden JA, Christley S, Bukhari SAC, Thorogood A, Matsen Iv FA, Wine Y, Laserson U, Klatzmann D, Douek DC, Lefranc MP, Collins AM, Bubela T, Kleinstein SH, Watson CT, Cowell LG, Scott JK, Kepler TB. Breden F, et al. Among authors: matsen iv fa. Front Immunol. 2017 Nov 1;8:1418. doi: 10.3389/fimmu.2017.01418. eCollection 2017. Front Immunol. 2017. PMID: 29163494 Free PMC article.
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