Hanage WP - Search Results

1

Inferring bacterial transmission dynamics using deep sequencing genomic surveillance data.

Senghore M, Read H, Oza P, Johnson S, Passarelli-Araujo H, Taylor BP, Ashley S, Grey A, Callendrello A, Lee R, Goddard MR, Lumley T, Hanage WP, Wiles S. Senghore M, et al. Among authors: hanage wp. Nat Commun. 2023 Oct 31;14(1):6397. doi: 10.1038/s41467-023-42211-8. Nat Commun. 2023. PMID: 37907520 Free PMC article.

2

Diversification of bacterial genome content through distinct mechanisms over different timescales.

Croucher NJ, Coupland PG, Stevenson AE, Callendrello A, Bentley SD, Hanage WP. Croucher NJ, et al. Among authors: hanage wp. Nat Commun. 2014 Nov 19;5:5471. doi: 10.1038/ncomms6471. Nat Commun. 2014. PMID: 25407023 Free PMC article.

3

Previously undetected super-spreading of Mycobacterium tuberculosis revealed by deep sequencing.

Lee RS, Proulx JF, McIntosh F, Behr MA, Hanage WP. Lee RS, et al. Among authors: hanage wp. Elife. 2020 Feb 4;9:e53245. doi: 10.7554/eLife.53245. Elife. 2020. PMID: 32014110 Free PMC article.

4

Coming to America: Genomic surveillance and how B.1.1.7 arrived in the US.

Qiu X, Hanage WP, Taylor BP. Qiu X, et al. Among authors: hanage wp. Cell. 2021 May 13;184(10):2532-2534. doi: 10.1016/j.cell.2021.04.031. Cell. 2021. PMID: 33989546 Free PMC article.

5

Rapid inference of antibiotic resistance and susceptibility by genomic neighbour typing.

Břinda K, Callendrello A, Ma KC, MacFadden DR, Charalampous T, Lee RS, Cowley L, Wadsworth CB, Grad YH, Kucherov G, O'Grady J, Baym M, Hanage WP. Břinda K, et al. Among authors: hanage wp. Nat Microbiol. 2020 Mar;5(3):455-464. doi: 10.1038/s41564-019-0656-6. Epub 2020 Feb 10. Nat Microbiol. 2020. PMID: 32042129 Free PMC article.

6

Reproducibility in science: important or incremental?

Lee RS, Hanage WP. Lee RS, et al. Among authors: hanage wp. Lancet Microbe. 2020 Jun;1(2):e59-60. doi: 10.1016/S2666-5247(20)30028-8. Epub 2020 May 14. Lancet Microbe. 2020. PMID: 32835329 Free PMC article. No abstract available.

7

Modelling infectious disease - time to think outside the box?

Wiles S, Hanage WP, Frankel G, Robertson B. Wiles S, et al. Among authors: hanage wp. Nat Rev Microbiol. 2006 Apr;4(4):307-12. doi: 10.1038/nrmicro1386. Nat Rev Microbiol. 2006. PMID: 16518420 Review.

8

Within-host Mycobacterium tuberculosis diversity and its utility for inferences of transmission.

Martin MA, Lee RS, Cowley LA, Gardy JL, Hanage WP. Martin MA, et al. Among authors: hanage wp. Microb Genom. 2018 Oct;4(10):e000217. doi: 10.1099/mgen.0.000217. Epub 2018 Oct 11. Microb Genom. 2018. PMID: 30303479 Free PMC article.

9

Population impact of SARS-CoV-2 variants with enhanced transmissibility and/or partial immune escape.

Bushman M, Kahn R, Taylor BP, Lipsitch M, Hanage WP. Bushman M, et al. Among authors: hanage wp. Cell. 2021 Dec 22;184(26):6229-6242.e18. doi: 10.1016/j.cell.2021.11.026. Epub 2021 Nov 19. Cell. 2021. PMID: 34910927 Free PMC article.

10

Combining genomic and epidemiological data to compare the transmissibility of SARS-CoV-2 variants Alpha and Iota.

Petrone ME, Rothman JE, Breban MI, Ott IM, Russell A, Lasek-Nesselquist E, Badr H, Kelly K, Omerza G, Renzette N, Watkins AE, Kalinich CC, Alpert T, Brito AF, Earnest R, Tikhonova IR, Castaldi C, Kelly JP, Shudt M, Plitnick J, Schneider E, Murphy S, Neal C, Laszlo E, Altajar A, Pearson C, Muyombwe A, Downing R, Razeq J, Niccolai L, Wilson MS, Anderson ML, Wang J, Liu C, Hui P, Mane S, Taylor BP, Hanage WP, Landry ML, Peaper DR, Bilguvar K, Fauver JR, Vogels CBF, Gardner LM, Pitzer VE, St George K, Adams MD, Grubaugh ND. Petrone ME, et al. Among authors: hanage wp. Commun Biol. 2022 May 11;5(1):439. doi: 10.1038/s42003-022-03347-3. Commun Biol. 2022. PMID: 35545661 Free PMC article.

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