Grigoryan G - Search Results

1

Illuminating protein space with a programmable generative model.

Ingraham JB, Baranov M, Costello Z, Barber KW, Wang W, Ismail A, Frappier V, Lord DM, Ng-Thow-Hing C, Van Vlack ER, Tie S, Xue V, Cowles SC, Leung A, Rodrigues JV, Morales-Perez CL, Ayoub AM, Green R, Puentes K, Oplinger F, Panwar NV, Obermeyer F, Root AR, Beam AL, Poelwijk FJ, Grigoryan G. Ingraham JB, et al. Among authors: grigoryan g. Nature. 2023 Nov;623(7989):1070-1078. doi: 10.1038/s41586-023-06728-8. Epub 2023 Nov 15. Nature. 2023. PMID: 37968394 Free PMC article.

2

Gap detection responses modelled using the Hill equation in adults with well-controlled HIV.

Niemczak CE, Cox C, Grigoryan G, Springer G, Fellows AM, Torre P 3rd, Hoffman HJ, Buckey JC, Plankey MW. Niemczak CE, et al. Among authors: grigoryan g. Int J Audiol. 2023 May;62(5):383-392. doi: 10.1080/14992027.2022.2068083. Epub 2022 May 6. Int J Audiol. 2023. PMID: 35521916 Free PMC article.

3

Design of self-assembling transmembrane helical bundles to elucidate principles required for membrane protein folding and ion transport.

Joh NH, Grigoryan G, Wu Y, DeGrado WF. Joh NH, et al. Among authors: grigoryan g. Philos Trans R Soc Lond B Biol Sci. 2017 Aug 5;372(1726):20160214. doi: 10.1098/rstb.2016.0214. Philos Trans R Soc Lond B Biol Sci. 2017. PMID: 28630154 Free PMC article. Review.

4

Graphene Symmetry Amplified by Designed Peptide Self-Assembly.

Mustata GM, Kim YH, Zhang J, DeGrado WF, Grigoryan G, Wanunu M. Mustata GM, et al. Among authors: grigoryan g. Biophys J. 2016 Jun 7;110(11):2507-2516. doi: 10.1016/j.bpj.2016.04.037. Biophys J. 2016. PMID: 27276268 Free PMC article.

5

Rapid search for tertiary fragments reveals protein sequence-structure relationships.

Zhou J, Grigoryan G. Zhou J, et al. Among authors: grigoryan g. Protein Sci. 2015 Apr;24(4):508-24. doi: 10.1002/pro.2610. Epub 2014 Dec 31. Protein Sci. 2015. PMID: 25420575 Free PMC article.

6

Absolute free energies of biomolecules from unperturbed ensembles.

Grigoryan G. Grigoryan G. J Comput Chem. 2013 Dec 5;34(31):2726-41. doi: 10.1002/jcc.23448. Epub 2013 Oct 16. J Comput Chem. 2013. PMID: 24132787

7

Large-scale design and refinement of stable proteins using sequence-only models.

Singer JM, Novotney S, Strickland D, Haddox HK, Leiby N, Rocklin GJ, Chow CM, Roy A, Bera AK, Motta FC, Cao L, Strauch EM, Chidyausiku TM, Ford A, Ho E, Zaitzeff A, Mackenzie CO, Eramian H, DiMaio F, Grigoryan G, Vaughn M, Stewart LJ, Baker D, Klavins E. Singer JM, et al. Among authors: grigoryan g. PLoS One. 2022 Mar 14;17(3):e0265020. doi: 10.1371/journal.pone.0265020. eCollection 2022. PLoS One. 2022. PMID: 35286324 Free PMC article.

8

Design of a heterospecific, tetrameric, 21-residue miniprotein with mixed alpha/beta structure.

Ali MH, Taylor CM, Grigoryan G, Allen KN, Imperiali B, Keating AE. Ali MH, et al. Among authors: grigoryan g. Structure. 2005 Feb;13(2):225-34. doi: 10.1016/j.str.2004.12.009. Structure. 2005. PMID: 15698566 Free article.

9

Structure-conditioned amino-acid couplings: How contact geometry affects pairwise sequence preferences.

Holland J, Grigoryan G. Holland J, et al. Among authors: grigoryan g. Protein Sci. 2022 Apr;31(4):900-917. doi: 10.1002/pro.4280. Epub 2022 Feb 15. Protein Sci. 2022. PMID: 35060221 Free PMC article.

10

Transmembrane communication: general principles and lessons from the structure and function of the M2 proton channel, K⁺ channels, and integrin receptors.

Grigoryan G, Moore DT, DeGrado WF. Grigoryan G, et al. Annu Rev Biochem. 2011;80:211-37. doi: 10.1146/annurev-biochem-091008-152423. Annu Rev Biochem. 2011. PMID: 21548783 Free PMC article. Review.

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