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Page 1
Identification of constrained sequence elements across 239 primate genomes.
Kuderna LFK, Ulirsch JC, Rashid S, Ameen M, Sundaram L, Hickey G, Cox AJ, Gao H, Kumar A, Aguet F, Christmas MJ, Clawson H, Haeussler M, Janiak MC, Kuhlwilm M, Orkin JD, Bataillon T, Manu S, Valenzuela A, Bergman J, Rouselle M, Silva FE, Agueda L, Blanc J, Gut M, de Vries D, Goodhead I, Harris RA, Raveendran M, Jensen A, Chuma IS, Horvath JE, Hvilsom C, Juan D, Frandsen P, Schraiber JG, de Melo FR, Bertuol F, Byrne H, Sampaio I, Farias I, Valsecchi J, Messias M, da Silva MNF, Trivedi M, Rossi R, Hrbek T, Andriaholinirina N, Rabarivola CJ, Zaramody A, Jolly CJ, Phillips-Conroy J, Wilkerson G, Abee C, Simmons JH, Fernandez-Duque E, Kanthaswamy S, Shiferaw F, Wu D, Zhou L, Shao Y, Zhang G, Keyyu JD, Knauf S, Le MD, Lizano E, Merker S, Navarro A, Nadler T, Khor CC, Lee J, Tan P, Lim WK, Kitchener AC, Zinner D, Gut I, Melin AD, Guschanski K, Schierup MH, Beck RMD, Karakikes I, Wang KC, Umapathy G, Roos C, Boubli JP, Siepel A, Kundaje A, Paten B, Lindblad-Toh K, Rogers J, Marques Bonet T, Farh KK. Kuderna LFK, et al. Among authors: karakikes i. Nature. 2024 Jan;625(7996):735-742. doi: 10.1038/s41586-023-06798-8. Epub 2023 Nov 29. Nature. 2024. PMID: 38030727 Free PMC article.
Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency.
Nair S, Ameen M, Sundaram L, Pampari A, Schreiber J, Balsubramani A, Wang YX, Burns D, Blau HM, Karakikes I, Wang KC, Kundaje A. Nair S, et al. Among authors: karakikes i. bioRxiv [Preprint]. 2023 Oct 21:2023.10.04.560808. doi: 10.1101/2023.10.04.560808. bioRxiv. 2023. PMID: 37873116 Free PMC article. Preprint.
Corrigendum to "Generation of human induced pluripotent stem cell lines derived from four patients with a pathogenic ALPK3 variant associated with adult-onset hypertrophic cardiomyopathy (HCM)" [Stem Cell Res. 73 (2023) 103233].
Cheawsamoot C, Ramchandani R, Ameen M, Arthur JA, Khongphatthanayothin A, Karakikes I, Shotelersuk V. Cheawsamoot C, et al. Among authors: karakikes i. Stem Cell Res. 2024 Feb;74:103300. doi: 10.1016/j.scr.2023.103300. Epub 2024 Jan 3. Stem Cell Res. 2024. PMID: 38176369 Free article. No abstract available.
Generation of human induced pluripotent stem cell lines derived from four patients with a pathogenic ALPK3 variant associated with adult-onset hypertrophic cardiomyopathy (HCM).
Cheawsamoot C, Ramchandani R, Ameen M, Arthur Ataam J, Khongphatthanayothin A, Shotelersuk V, Karakikes I. Cheawsamoot C, et al. Among authors: karakikes i. Stem Cell Res. 2023 Dec;73:103233. doi: 10.1016/j.scr.2023.103233. Epub 2023 Oct 26. Stem Cell Res. 2023. PMID: 37944352 Free article.
Precision unleashed: tackling DNA mismatch repair for enhanced prime editing.
Ramchandani R, Bharucha N, Karakikes I. Ramchandani R, et al. Among authors: karakikes i. Mol Ther Nucleic Acids. 2023 Nov 18;34:102061. doi: 10.1016/j.omtn.2023.102061. eCollection 2023 Dec 12. Mol Ther Nucleic Acids. 2023. PMID: 38053563 Free PMC article. No abstract available.
Personalized transcriptome signatures in a cardiomyopathy stem cell biobank.
Monte E, Furihata T, Wang G, Perea-Gil I, Wei E, Chaib H, Nair R, Guevara JV, Mares R, Cheng X, Zhuge Y, Black K, Serrano R, Dagan-Rosenfeld O, Maguire P, Mercola M, Karakikes I, Wu JC, Snyder MP. Monte E, et al. Among authors: karakikes i. bioRxiv [Preprint]. 2024 May 14:2024.05.10.593618. doi: 10.1101/2024.05.10.593618. bioRxiv. 2024. PMID: 38798547 Free PMC article. Preprint.
Empagliflozin Attenuates Arrhythmias in an iPSC-Based Model of Hypertrophy Cardiomyopathy.
Arthur Ataam J, Belbachir N, Perea-Gil I, Termglincan V, Vadgama N, Garg P, Ramchandani R, Gavidia AA, Roura S, Gálvez-Montón C, Wu JC, Bayés-Genis A, Karakikes I. Arthur Ataam J, et al. Among authors: karakikes i. Circ Genom Precis Med. 2024 May 16:e004526. doi: 10.1161/CIRCGEN.123.004526. Online ahead of print. Circ Genom Precis Med. 2024. PMID: 38752368 No abstract available.
Genetic analysis and multimodal imaging identify novel mtDNA 12148T>C leading to multisystem dysfunction with tissue-specific heteroplasmy.
Belle K, Kreymerman A, Vadgama N, Ji MH, Randhawa S, Caicedo J, Wong M, Muscat SP, Gifford CA, Lee RT, Nasir J, Young JL, Enns G, Karakikes I, Mercola M, Wood EH. Belle K, et al. Among authors: karakikes i. medRxiv [Preprint]. 2023 Nov 5:2023.11.03.23297854. doi: 10.1101/2023.11.03.23297854. medRxiv. 2023. PMID: 37961166 Free PMC article. Preprint.
A deep learning platform to assess drug proarrhythmia risk.
Serrano R, Feyen DAM, Bruyneel AAN, Hnatiuk AP, Vu MM, Amatya PL, Perea-Gil I, Prado M, Seeger T, Wu JC, Karakikes I, Mercola M. Serrano R, et al. Among authors: karakikes i. Cell Stem Cell. 2023 Jan 5;30(1):86-95.e4. doi: 10.1016/j.stem.2022.12.002. Epub 2022 Dec 22. Cell Stem Cell. 2023. PMID: 36563695 Free PMC article.
86 results