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Early life adversity shapes social subordination and cell type-specific transcriptomic patterning in the ventral hippocampus.
Kos A, Lopez JP, Bordes J, de Donno C, Dine J, Brivio E, Karamihalev S, Luecken MD, Almeida-Correa S, Gasperoni S, Dick A, Miranda L, Büttner M, Stoffel R, Flachskamm C, Theis FJ, Schmidt MV, Chen A. Kos A, et al. Among authors: theis fj. Sci Adv. 2023 Dec;9(48):eadj3793. doi: 10.1126/sciadv.adj3793. Epub 2023 Dec 1. Sci Adv. 2023. PMID: 38039370 Free PMC article.
destiny: diffusion maps for large-scale single-cell data in R.
Angerer P, Haghverdi L, Büttner M, Theis FJ, Marr C, Buettner F. Angerer P, et al. Among authors: theis fj. Bioinformatics. 2016 Apr 15;32(8):1241-3. doi: 10.1093/bioinformatics/btv715. Epub 2015 Dec 14. Bioinformatics. 2016. PMID: 26668002
Diffusion pseudotime robustly reconstructs lineage branching.
Haghverdi L, Büttner M, Wolf FA, Buettner F, Theis FJ. Haghverdi L, et al. Among authors: theis fj. Nat Methods. 2016 Oct;13(10):845-8. doi: 10.1038/nmeth.3971. Epub 2016 Aug 29. Nat Methods. 2016. PMID: 27571553
Single-cell molecular profiling of all three components of the HPA axis reveals adrenal ABCB1 as a regulator of stress adaptation.
Lopez JP, Brivio E, Santambrogio A, De Donno C, Kos A, Peters M, Rost N, Czamara D, Brückl TM, Roeh S, Pöhlmann ML, Engelhardt C, Ressle A, Stoffel R, Tontsch A, Villamizar JM, Reincke M, Riester A, Sbiera S, Fassnacht M, Mayberg HS, Craighead WE, Dunlop BW, Nemeroff CB, Schmidt MV, Binder EB, Theis FJ, Beuschlein F, Andoniadou CL, Chen A. Lopez JP, et al. Among authors: theis fj. Sci Adv. 2021 Jan 27;7(5):eabe4497. doi: 10.1126/sciadv.abe4497. Print 2021 Jan. Sci Adv. 2021. PMID: 33571131 Free PMC article.
CD81 marks immature and dedifferentiated pancreatic β-cells.
Salinno C, Büttner M, Cota P, Tritschler S, Tarquis-Medina M, Bastidas-Ponce A, Scheibner K, Burtscher I, Böttcher A, Theis FJ, Bakhti M, Lickert H. Salinno C, et al. Among authors: theis fj. Mol Metab. 2021 Jul;49:101188. doi: 10.1016/j.molmet.2021.101188. Epub 2021 Feb 11. Mol Metab. 2021. PMID: 33582383 Free PMC article.
Publisher Correction: Epithelial cell plasticity drives endoderm formation during gastrulation.
Scheibner K, Schirge S, Burtscher I, Büttner M, Sterr M, Yang D, Böttcher A, Ansarullah, Irmler M, Beckers J, Cernilogar FM, Schotta G, Theis FJ, Lickert H. Scheibner K, et al. Among authors: theis fj. Nat Cell Biol. 2021 Aug;23(8):925. doi: 10.1038/s41556-021-00735-5. Nat Cell Biol. 2021. PMID: 34294885 Free PMC article. No abstract available.
Mapping single-cell data to reference atlases by transfer learning.
Lotfollahi M, Naghipourfar M, Luecken MD, Khajavi M, Büttner M, Wagenstetter M, Avsec Ž, Gayoso A, Yosef N, Interlandi M, Rybakov S, Misharin AV, Theis FJ. Lotfollahi M, et al. Among authors: theis fj. Nat Biotechnol. 2022 Jan;40(1):121-130. doi: 10.1038/s41587-021-01001-7. Epub 2021 Aug 30. Nat Biotechnol. 2022. PMID: 34462589 Free PMC article.
352 results