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A hyperparameter-randomized ensemble approach for robust clustering across diverse datasets.
bioRxiv [Preprint]. 2023 Dec 19:2023.12.18.571953. doi: 10.1101/2023.12.18.571953.
bioRxiv. 2023.
PMID: 38187667
Free PMC article.
Preprint.
FLOW-MAP: a graph-based, force-directed layout algorithm for trajectory mapping in single-cell time course datasets.
Ko ME, Williams CM, Fread KI, Goggin SM, Rustagi RS, Fragiadakis GK, Nolan GP, Zunder ER.
Ko ME, et al. Among authors: goggin sm.
Nat Protoc. 2020 Feb;15(2):398-420. doi: 10.1038/s41596-019-0246-3. Epub 2020 Jan 13.
Nat Protoc. 2020.
PMID: 31932774
Free PMC article.
Item in Clipboard
A developmental atlas of somatosensory diversification and maturation in the dorsal root ganglia by single-cell mass cytometry.
Keeler AB, Van Deusen AL, Gadani IC, Williams CM, Goggin SM, Hirt AK, Vradenburgh SA, Fread KI, Puleo EA, Jin L, Calhan OY, Deppmann CD, Zunder ER.
Keeler AB, et al. Among authors: goggin sm.
Nat Neurosci. 2022 Nov;25(11):1543-1558. doi: 10.1038/s41593-022-01181-8. Epub 2022 Oct 27.
Nat Neurosci. 2022.
PMID: 36303068
Free PMC article.
Item in Clipboard
Direct comparison of mass cytometry and single-cell RNA sequencing of human peripheral blood mononuclear cells.
Su EY, Fread K, Goggin S, Zunder ER, Cahan P.
Su EY, et al.
Sci Data. 2024 May 30;11(1):559. doi: 10.1038/s41597-024-03399-6.
Sci Data. 2024.
PMID: 38816402
Free PMC article.
Item in Clipboard
High-resolution genome-wide functional dissection of transcriptional regulatory regions and nucleotides in human.
Wang X, He L, Goggin SM, Saadat A, Wang L, Sinnott-Armstrong N, Claussnitzer M, Kellis M.
Wang X, et al. Among authors: goggin sm.
Nat Commun. 2018 Dec 19;9(1):5380. doi: 10.1038/s41467-018-07746-1.
Nat Commun. 2018.
PMID: 30568279
Free PMC article.
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