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Expert-centered Evaluation of Deep Learning Algorithms for Brain Tumor Segmentation.
Hoebel KV, Bridge CP, Ahmed S, Akintola O, Chung C, Huang RY, Johnson JM, Kim A, Ly KI, Chang K, Patel J, Pinho M, Batchelor TT, Rosen BR, Gerstner ER, Kalpathy-Cramer J. Hoebel KV, et al. Among authors: ahmed s. Radiol Artif Intell. 2024 Jan;6(1):e220231. doi: 10.1148/ryai.220231. Radiol Artif Intell. 2024. PMID: 38197800 Free PMC article. Clinical Trial.
Evaluation of deep learning-based multiparametric MRI oropharyngeal primary tumor auto-segmentation and investigation of input channel effects: Results from a prospective imaging registry.
Wahid KA, Ahmed S, He R, van Dijk LV, Teuwen J, McDonald BA, Salama V, Mohamed ASR, Salzillo T, Dede C, Taku N, Lai SY, Fuller CD, Naser MA. Wahid KA, et al. Among authors: ahmed s. Clin Transl Radiat Oncol. 2021 Oct 16;32:6-14. doi: 10.1016/j.ctro.2021.10.003. eCollection 2022 Jan. Clin Transl Radiat Oncol. 2021. PMID: 34765748 Free PMC article.
Application of simultaneous uncertainty quantification for image segmentation with probabilistic deep learning: Performance benchmarking of oropharyngeal cancer target delineation as a use-case.
Sahlsten J, Jaskari J, Wahid KA, Ahmed S, Glerean E, He R, Kann BH, Mäkitie A, Fuller CD, Naser MA, Kaski K. Sahlsten J, et al. Among authors: ahmed s. medRxiv [Preprint]. 2023 Feb 24:2023.02.20.23286188. doi: 10.1101/2023.02.20.23286188. medRxiv. 2023. PMID: 36865296 Free PMC article. Preprint.
Quality assurance assessment of intra-acquisition diffusion-weighted and T2-weighted magnetic resonance imaging registration and contour propagation for head and neck cancer radiotherapy.
Naser MA, Wahid KA, Ahmed S, Salama V, Dede C, Edwards BW, Lin R, McDonald B, Salzillo TC, He R, Ding Y, Abdelaal MA, Thill D, O'Connell N, Willcut V, Christodouleas JP, Lai SY, Fuller CD, Mohamed ASR. Naser MA, et al. Among authors: ahmed s. Med Phys. 2023 Apr;50(4):2089-2099. doi: 10.1002/mp.16128. Epub 2022 Dec 29. Med Phys. 2023. PMID: 36519973 Free PMC article.
Investigation of autosegmentation techniques on T2-weighted MRI for off-line dose reconstruction in MR-linac workflow for head and neck cancers.
McDonald BA, Cardenas CE, O'Connell N, Ahmed S, Naser MA, Wahid KA, Xu J, Thill D, Zuhour RJ, Mesko S, Augustyn A, Buszek SM, Grant S, Chapman BV, Bagley AF, He R, Mohamed ASR, Christodouleas J, Brock KK, Fuller CD. McDonald BA, et al. Among authors: ahmed s. Med Phys. 2024 Jan;51(1):278-291. doi: 10.1002/mp.16582. Epub 2023 Jul 20. Med Phys. 2024. PMID: 37475466
Deep-learning-based generation of synthetic 6-minute MRI from 2-minute MRI for use in head and neck cancer radiotherapy.
Wahid KA, Xu J, El-Habashy D, Khamis Y, Abobakr M, McDonald B, O' Connell N, Thill D, Ahmed S, Sharafi CS, Preston K, Salzillo TC, Mohamed ASR, He R, Cho N, Christodouleas J, Fuller CD, Naser MA. Wahid KA, et al. Among authors: ahmed s. Front Oncol. 2022 Nov 8;12:975902. doi: 10.3389/fonc.2022.975902. eCollection 2022. Front Oncol. 2022. PMID: 36425548 Free PMC article.
Multicenter study demonstrates radiomic features derived from magnetic resonance perfusion images identify pseudoprogression in glioblastoma.
Elshafeey N, Kotrotsou A, Hassan A, Elshafei N, Hassan I, Ahmed S, Abrol S, Agarwal A, El Salek K, Bergamaschi S, Acharya J, Moron FE, Law M, Fuller GN, Huse JT, Zinn PO, Colen RR. Elshafeey N, et al. Among authors: ahmed s. Nat Commun. 2019 Jul 18;10(1):3170. doi: 10.1038/s41467-019-11007-0. Nat Commun. 2019. PMID: 31320621 Free PMC article.
Development and implementation of optimized endogenous contrast sequences for delineation in adaptive radiotherapy on a 1.5T MR-linear-accelerator: a prospective R-IDEAL stage 0-2a quantitative/qualitative evaluation of in vivo site-specific quality-assurance using a 3D T2 fat-suppressed platform for head and neck cancer.
Joint Head and Neck Radiotherapy-MRI Development Cooperative; Salzillo TC, Dresner MA, Way A, Wahid KA, McDonald BA, Mulder S, Naser MA, He R, Ding Y, Yoder A, Ahmed S, Corrigan KL, Manzar GS, Andring L, Pinnix C, Stafford RJ, Mohamed ASR, Christodouleas J, Wang J, Fuller CD. Joint Head and Neck Radiotherapy-MRI Development Cooperative, et al. Among authors: ahmed s. J Med Imaging (Bellingham). 2023 Nov;10(6):065501. doi: 10.1117/1.JMI.10.6.065501. Epub 2023 Nov 6. J Med Imaging (Bellingham). 2023. PMID: 37937259
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