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Chromosome level genome assembly of the Etruscan shrew Suncus etruscus.
Bukhman YV, Meyer S, Chu LF, Abueg L, Antosiewicz-Bourget J, Balacco J, Brecht M, Dinatale E, Fedrigo O, Formenti G, Fungtammasan A, Giri SJ, Hiller M, Howe K, Kihara D, Mamott D, Mountcastle J, Pelan S, Rabbani K, Sims Y, Tracey A, Wood JMD, Jarvis ED, Thomson JA, Chaisson MJP, Stewart R. Bukhman YV, et al. Among authors: fedrigo o. Sci Data. 2024 Feb 7;11(1):176. doi: 10.1038/s41597-024-03011-x. Sci Data. 2024. PMID: 38326333 Free PMC article.
PAQ: Partition Analysis of Quasispecies.
Baccam P, Thompson RJ, Fedrigo O, Carpenter S, Cornette JL. Baccam P, et al. Among authors: fedrigo o. Bioinformatics. 2001 Jan;17(1):16-22. doi: 10.1093/bioinformatics/17.1.16. Bioinformatics. 2001. PMID: 11222259
The genome of the sea urchin Strongylocentrotus purpuratus.
Sea Urchin Genome Sequencing Consortium; Sodergren E, Weinstock GM, Davidson EH, Cameron RA, Gibbs RA, Angerer RC, Angerer LM, Arnone MI, Burgess DR, Burke RD, Coffman JA, Dean M, Elphick MR, Ettensohn CA, Foltz KR, Hamdoun A, Hynes RO, Klein WH, Marzluff W, McClay DR, Morris RL, Mushegian A, Rast JP, Smith LC, Thorndyke MC, Vacquier VD, Wessel GM, Wray G, Zhang L, Elsik CG, Ermolaeva O, Hlavina W, Hofmann G, Kitts P, Landrum MJ, Mackey AJ, Maglott D, Panopoulou G, Poustka AJ, Pruitt K, Sapojnikov V, Song X, Souvorov A, Solovyev V, Wei Z, Whittaker CA, Worley K, Durbin KJ, Shen Y, Fedrigo O, Garfield D, Haygood R, Primus A, Satija R, Severson T, Gonzalez-Garay ML, Jackson AR, Milosavljevic A, Tong M, Killian CE, Livingston BT, Wilt FH, Adams N, Bellé R, Carbonneau S, Cheung R, Cormier P, Cosson B, Croce J, Fernandez-Guerra A, Genevière AM, Goel M, Kelkar H, Morales J, Mulner-Lorillon O, Robertson AJ, Goldstone JV, Cole B, Epel D, Gold B, Hahn ME, Howard-Ashby M, Scally M, Stegeman JJ, Allgood EL, Cool J, Judkins KM, McCafferty SS, Musante AM, Obar RA, Rawson AP, Rossetti BJ, Gibbons IR, Hoffman MP, Leone A, Istrail S, Materna SC, Samanta MP, Stolc V, Tongprasit W, Tu Q, Ber… See abstract for full author list ➔ Sea Urchin Genome Sequencing Consortium, et al. Among authors: fedrigo o. Science. 2006 Nov 10;314(5801):941-52. doi: 10.1126/science.1133609. Science. 2006. PMID: 17095691 Free PMC article.
High-coverage sequencing and annotated assemblies of the budgerigar genome.
Ganapathy G, Howard JT, Ward JM, Li J, Li B, Li Y, Xiong Y, Zhang Y, Zhou S, Schwartz DC, Schatz M, Aboukhalil R, Fedrigo O, Bukovnik L, Wang T, Wray G, Rasolonjatovo I, Winer R, Knight JR, Koren S, Warren WC, Zhang G, Phillippy AM, Jarvis ED. Ganapathy G, et al. Among authors: fedrigo o. Gigascience. 2014 Jul 8;3:11. doi: 10.1186/2047-217X-3-11. eCollection 2014. Gigascience. 2014. PMID: 25061512 Free PMC article.
The genome sequence of the Eurasian red squirrel, Sciurus vulgaris Linnaeus 1758.
Mead D, Fingland K, Cripps R, Portela Miguez R, Smith M, Corton C, Oliver K, Skelton J, Betteridge E, Dolucan J, Dudchenko O, Omer AD, Weisz D, Lieberman Aiden E, Fedrigo O, Mountcastle J, Jarvis E, McCarthy SA, Sims Y, Torrance J, Tracey A, Howe K, Challis R, Durbin R, Blaxter M. Mead D, et al. Among authors: fedrigo o. Wellcome Open Res. 2020 Feb 3;5:18. doi: 10.12688/wellcomeopenres.15679.1. eCollection 2020. Wellcome Open Res. 2020. PMID: 32587897 Free PMC article.
86 results