Baker D - Search Results

1

Blueprinting extendable nanomaterials with standardized protein blocks.

Huddy TF, Hsia Y, Kibler RD, Xu J, Bethel N, Nagarajan D, Redler R, Leung PJY, Weidle C, Courbet A, Yang EC, Bera AK, Coudray N, Calise SJ, Davila-Hernandez FA, Han HL, Carr KD, Li Z, McHugh R, Reggiano G, Kang A, Sankaran B, Dickinson MS, Coventry B, Brunette TJ, Liu Y, Dauparas J, Borst AJ, Ekiert D, Kollman JM, Bhabha G, Baker D. Huddy TF, et al. Among authors: baker d. Nature. 2024 Mar;627(8005):898-904. doi: 10.1038/s41586-024-07188-4. Epub 2024 Mar 13. Nature. 2024. PMID: 38480887 Free PMC article.

2

A surprising simplicity to protein folding.

Baker D. Baker D. Nature. 2000 May 4;405(6782):39-42. doi: 10.1038/35011000. Nature. 2000. PMID: 10811210

3

High-resolution mapping of protein sequence-function relationships.

Fowler DM, Araya CL, Fleishman SJ, Kellogg EH, Stephany JJ, Baker D, Fields S. Fowler DM, et al. Among authors: baker d. Nat Methods. 2010 Sep;7(9):741-6. doi: 10.1038/nmeth.1492. Epub 2010 Aug 15. Nat Methods. 2010. PMID: 20711194 Free PMC article.

4

Improved molecular replacement by density- and energy-guided protein structure optimization.

DiMaio F, Terwilliger TC, Read RJ, Wlodawer A, Oberdorfer G, Wagner U, Valkov E, Alon A, Fass D, Axelrod HL, Das D, Vorobiev SM, Iwaï H, Pokkuluri PR, Baker D. DiMaio F, et al. Among authors: baker d. Nature. 2011 May 26;473(7348):540-3. doi: 10.1038/nature09964. Epub 2011 May 1. Nature. 2011. PMID: 21532589 Free PMC article.

5

Computational design of proteins targeting the conserved stem region of influenza hemagglutinin.

Fleishman SJ, Whitehead TA, Ekiert DC, Dreyfus C, Corn JE, Strauch EM, Wilson IA, Baker D. Fleishman SJ, et al. Among authors: baker d. Science. 2011 May 13;332(6031):816-21. doi: 10.1126/science.1202617. Science. 2011. PMID: 21566186 Free PMC article.

6

Principles for designing ideal protein structures.

Koga N, Tatsumi-Koga R, Liu G, Xiao R, Acton TB, Montelione GT, Baker D. Koga N, et al. Among authors: baker d. Nature. 2012 Nov 8;491(7423):222-7. doi: 10.1038/nature11600. Nature. 2012. PMID: 23135467 Free PMC article.

7

High-resolution comparative modeling with RosettaCM.

Song Y, DiMaio F, Wang RY, Kim D, Miles C, Brunette T, Thompson J, Baker D. Song Y, et al. Among authors: baker d. Structure. 2013 Oct 8;21(10):1735-42. doi: 10.1016/j.str.2013.08.005. Epub 2013 Sep 12. Structure. 2013. PMID: 24035711 Free PMC article.

8

Small molecule probes to quantify the functional fraction of a specific protein in a cell with minimal folding equilibrium shifts.

Liu Y, Tan YL, Zhang X, Bhabha G, Ekiert DC, Genereux JC, Cho Y, Kipnis Y, Bjelic S, Baker D, Kelly JW. Liu Y, et al. Among authors: baker d. Proc Natl Acad Sci U S A. 2014 Mar 25;111(12):4449-54. doi: 10.1073/pnas.1323268111. Epub 2014 Mar 3. Proc Natl Acad Sci U S A. 2014. PMID: 24591605 Free PMC article.

9

Accurate design of co-assembling multi-component protein nanomaterials.

King NP, Bale JB, Sheffler W, McNamara DE, Gonen S, Gonen T, Yeates TO, Baker D. King NP, et al. Among authors: baker d. Nature. 2014 Jun 5;510(7503):103-8. doi: 10.1038/nature13404. Epub 2014 May 25. Nature. 2014. PMID: 24870237 Free PMC article.

10

De novo-designed enzymes as small-molecule-regulated fluorescence imaging tags and fluorescent reporters.

Liu Y, Zhang X, Tan YL, Bhabha G, Ekiert DC, Kipnis Y, Bjelic S, Baker D, Kelly JW. Liu Y, et al. Among authors: baker d. J Am Chem Soc. 2014 Sep 24;136(38):13102-5. doi: 10.1021/ja5056356. Epub 2014 Sep 11. J Am Chem Soc. 2014. PMID: 25209927 Free PMC article.

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