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Polygenic risk score-analysis of thromboembolism in patients with acute lymphoblastic leukemia.
Jarvis KB, Nielsen RL, Gupta R, Hede FD, Huttunen P, Jónsson ÓG, Rank CU, Ranta S, Saks K, Trakymiene SS, Tuckuviene R, Tulstrup M; INVENT consortium; Ruud E, Schmiegelow K, LeBlanc M. Jarvis KB, et al. Among authors: gupta r. Thromb Res. 2020 Dec;196:15-20. doi: 10.1016/j.thromres.2020.08.015. Epub 2020 Aug 12. Thromb Res. 2020. PMID: 32818716 Free article.
Data integration for prediction of weight loss in randomized controlled dietary trials.
Nielsen RL, Helenius M, Garcia SL, Roager HM, Aytan-Aktug D, Hansen LBS, Lind MV, Vogt JK, Dalgaard MD, Bahl MI, Jensen CB, Muktupavela R, Warinner C, Aaskov V, Gøbel R, Kristensen M, Frøkiær H, Sparholt MH, Christensen AF, Vestergaard H, Hansen T, Kristiansen K, Brix S, Petersen TN, Lauritzen L, Licht TR, Pedersen O, Gupta R. Nielsen RL, et al. Among authors: gupta r. Sci Rep. 2020 Nov 18;10(1):20103. doi: 10.1038/s41598-020-76097-z. Sci Rep. 2020. PMID: 33208769 Free PMC article.
Can Machine Learning Models Predict Asparaginase-associated Pancreatitis in Childhood Acute Lymphoblastic Leukemia.
Nielsen RL, Wolthers BO, Helenius M, Albertsen BK, Clemmensen L, Nielsen K, Kanerva J, Niinimäki R, Frandsen TL, Attarbaschi A, Barzilai S, Colombini A, Escherich G, Aytan-Aktug D, Liu HC, Möricke A, Samarasinghe S, van der Sluis IM, Stanulla M, Tulstrup M, Yadav R, Zapotocka E, Schmiegelow K, Gupta R. Nielsen RL, et al. Among authors: gupta r. J Pediatr Hematol Oncol. 2022 Apr 1;44(3):e628-e636. doi: 10.1097/MPH.0000000000002292. J Pediatr Hematol Oncol. 2022. PMID: 35226426 Free PMC article.
Characteristics of white blood cell count in acute lymphoblastic leukemia: A COST LEGEND phenotype-genotype study.
Helenius M, Vaitkeviciene G, Abrahamsson J, Jonsson ÓG, Lund B, Harila-Saari A, Vettenranta K, Mikkel S, Stanulla M, Lopez-Lopez E, Waanders E, Madsen HO, Marquart HV, Modvig S, Gupta R, Schmiegelow K, Nielsen RL. Helenius M, et al. Among authors: gupta r. Pediatr Blood Cancer. 2022 Jun;69(6):e29582. doi: 10.1002/pbc.29582. Epub 2022 Mar 22. Pediatr Blood Cancer. 2022. PMID: 35316565
TIS Transformer: remapping the human proteome using deep learning.
Clauwaert J, McVey Z, Gupta R, Menschaert G. Clauwaert J, et al. Among authors: gupta r. NAR Genom Bioinform. 2023 Mar 3;5(1):lqad021. doi: 10.1093/nargab/lqad021. eCollection 2023 Mar. NAR Genom Bioinform. 2023. PMID: 36879896 Free PMC article.
Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios.
Besenbacher S, Liu S, Izarzugaza JM, Grove J, Belling K, Bork-Jensen J, Huang S, Als TD, Li S, Yadav R, Rubio-García A, Lescai F, Demontis D, Rao J, Ye W, Mailund T, Friborg RM, Pedersen CN, Xu R, Sun J, Liu H, Wang O, Cheng X, Flores D, Rydza E, Rapacki K, Damm Sørensen J, Chmura P, Westergaard D, Dworzynski P, Sørensen TI, Lund O, Hansen T, Xu X, Li N, Bolund L, Pedersen O, Eiberg H, Krogh A, Børglum AD, Brunak S, Kristiansen K, Schierup MH, Wang J, Gupta R, Villesen P, Rasmussen S. Besenbacher S, et al. Among authors: gupta r. Nat Commun. 2015 Jan 19;6:5969. doi: 10.1038/ncomms6969. Nat Commun. 2015. PMID: 25597990 Free PMC article.
Inherited coding variants at the CDKN2A locus influence susceptibility to acute lymphoblastic leukaemia in children.
Xu H, Zhang H, Yang W, Yadav R, Morrison AC, Qian M, Devidas M, Liu Y, Perez-Andreu V, Zhao X, Gastier-Foster JM, Lupo PJ, Neale G, Raetz E, Larsen E, Bowman WP, Carroll WL, Winick N, Williams R, Hansen T, Holm JC, Mardis E, Fulton R, Pui CH, Zhang J, Mullighan CG, Evans WE, Hunger SP, Gupta R, Schmiegelow K, Loh ML, Relling MV, Yang JJ. Xu H, et al. Among authors: gupta r. Nat Commun. 2015 Jun 24;6:7553. doi: 10.1038/ncomms8553. Nat Commun. 2015. PMID: 26104880 Free PMC article.
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