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Post-transcriptional splicing can occur in a slow-moving zone around the gene.
Coté A, O'Farrell A, Dardani I, Dunagin M, Coté C, Wan Y, Bayatpour S, Drexler HL, Alexander KA, Chen F, Wassie AT, Patel R, Pham K, Boyden ES, Berger S, Phillips-Cremins J, Churchman LS, Raj A. Coté A, et al. Among authors: chen f. Elife. 2024 Apr 5;12:RP91357. doi: 10.7554/eLife.91357. Elife. 2024. PMID: 38577979 Free PMC article.
Expansion microscopy of C. elegans.
Yu CJ, Barry NC, Wassie AT, Sinha A, Bhattacharya A, Asano S, Zhang C, Chen F, Hobert O, Goodman MB, Haspel G, Boyden ES. Yu CJ, et al. Among authors: chen f. Elife. 2020 May 1;9:e46249. doi: 10.7554/eLife.46249. Elife. 2020. PMID: 32356725 Free PMC article.
Nanoscale imaging of RNA with expansion microscopy.
Chen F, Wassie AT, Cote AJ, Sinha A, Alon S, Asano S, Daugharthy ER, Chang JB, Marblestone A, Church GM, Raj A, Boyden ES. Chen F, et al. Nat Methods. 2016 Aug;13(8):679-84. doi: 10.1038/nmeth.3899. Epub 2016 Jul 4. Nat Methods. 2016. PMID: 27376770 Free PMC article.
Optical imaging. Expansion microscopy.
Chen F, Tillberg PW, Boyden ES. Chen F, et al. Science. 2015 Jan 30;347(6221):543-8. doi: 10.1126/science.1260088. Epub 2015 Jan 15. Science. 2015. PMID: 25592419 Free PMC article.
Iterative expansion microscopy.
Chang JB, Chen F, Yoon YG, Jung EE, Babcock H, Kang JS, Asano S, Suk HJ, Pak N, Tillberg PW, Wassie AT, Cai D, Boyden ES. Chang JB, et al. Among authors: chen f. Nat Methods. 2017 Jun;14(6):593-599. doi: 10.1038/nmeth.4261. Epub 2017 Apr 17. Nat Methods. 2017. PMID: 28417997 Free PMC article.
Barcoded oligonucleotides ligated on RNA amplified for multiplexed and parallel in situ analyses.
Liu S, Punthambaker S, Iyer EPR, Ferrante T, Goodwin D, Fürth D, Pawlowski AC, Jindal K, Tam JM, Mifflin L, Alon S, Sinha A, Wassie AT, Chen F, Cheng A, Willocq V, Meyer K, Ling KH, Camplisson CK, Kohman RE, Aach J, Lee JH, Yankner BA, Boyden ES, Church GM. Liu S, et al. Among authors: chen f. Nucleic Acids Res. 2021 Jun 4;49(10):e58. doi: 10.1093/nar/gkab120. Nucleic Acids Res. 2021. PMID: 33693773 Free PMC article.
RNA timestamps identify the age of single molecules in RNA sequencing.
Rodriques SG, Chen LM, Liu S, Zhong ED, Scherrer JR, Boyden ES, Chen F. Rodriques SG, et al. Among authors: chen lm, chen f. Nat Biotechnol. 2021 Mar;39(3):320-325. doi: 10.1038/s41587-020-0704-z. Epub 2020 Oct 19. Nat Biotechnol. 2021. PMID: 33077959 Free PMC article.
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