Segata N - Search Results

1

CoCas9 is a compact nuclease from the human microbiome for efficient and precise genome editing.

Pedrazzoli E, Demozzi M, Visentin E, Ciciani M, Bonuzzi I, Pezzè L, Lucchetta L, Maule G, Amistadi S, Esposito F, Lupo M, Miccio A, Auricchio A, Casini A, Segata N, Cereseto A. Pedrazzoli E, et al. Among authors: segata n. Nat Commun. 2024 Apr 24;15(1):3478. doi: 10.1038/s41467-024-47800-9. Nat Commun. 2024. PMID: 38658578 Free PMC article.

2

The short-term impact of probiotic consumption on the oral cavity microbiome.

Dassi E, Ferretti P, Covello G; HTM-CMB-2015; Bertorelli R, Denti MA, De Sanctis V, Tett A, Segata N. Dassi E, et al. Among authors: segata n. Sci Rep. 2018 Jul 11;8(1):10476. doi: 10.1038/s41598-018-28491-x. Sci Rep. 2018. PMID: 29992994 Free PMC article.

3

Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0.

Asnicar F, Thomas AM, Beghini F, Mengoni C, Manara S, Manghi P, Zhu Q, Bolzan M, Cumbo F, May U, Sanders JG, Zolfo M, Kopylova E, Pasolli E, Knight R, Mirarab S, Huttenhower C, Segata N. Asnicar F, et al. Among authors: segata n. Nat Commun. 2020 May 19;11(1):2500. doi: 10.1038/s41467-020-16366-7. Nat Commun. 2020. PMID: 32427907 Free PMC article.

4

Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome.

Pasolli E, De Filippis F, Mauriello IE, Cumbo F, Walsh AM, Leech J, Cotter PD, Segata N, Ercolini D. Pasolli E, et al. Among authors: segata n. Nat Commun. 2020 May 25;11(1):2610. doi: 10.1038/s41467-020-16438-8. Nat Commun. 2020. PMID: 32451391 Free PMC article.

5

Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly.

Karcher N, Nigro E, Punčochář M, Blanco-Míguez A, Ciciani M, Manghi P, Zolfo M, Cumbo F, Manara S, Golzato D, Cereseto A, Arumugam M, Bui TPN, Tytgat HLP, Valles-Colomer M, de Vos WM, Segata N. Karcher N, et al. Among authors: segata n. Genome Biol. 2021 Jul 14;22(1):209. doi: 10.1186/s13059-021-02427-7. Genome Biol. 2021. PMID: 34261503 Free PMC article.

6

Automated identification of sequence-tailored Cas9 proteins using massive metagenomic data.

Ciciani M, Demozzi M, Pedrazzoli E, Visentin E, Pezzè L, Signorini LF, Blanco-Miguez A, Zolfo M, Asnicar F, Casini A, Cereseto A, Segata N. Ciciani M, et al. Among authors: segata n. Nat Commun. 2022 Oct 29;13(1):6474. doi: 10.1038/s41467-022-34213-9. Nat Commun. 2022. PMID: 36309502 Free PMC article.

7

Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4.

Blanco-Míguez A, Beghini F, Cumbo F, McIver LJ, Thompson KN, Zolfo M, Manghi P, Dubois L, Huang KD, Thomas AM, Nickols WA, Piccinno G, Piperni E, Punčochář M, Valles-Colomer M, Tett A, Giordano F, Davies R, Wolf J, Berry SE, Spector TD, Franzosa EA, Pasolli E, Asnicar F, Huttenhower C, Segata N. Blanco-Míguez A, et al. Among authors: segata n. Nat Biotechnol. 2023 Nov;41(11):1633-1644. doi: 10.1038/s41587-023-01688-w. Epub 2023 Feb 23. Nat Biotechnol. 2023. PMID: 36823356 Free PMC article.

8

Population-level impacts of antibiotic usage on the human gut microbiome.

Lee K, Raguideau S, Sirén K, Asnicar F, Cumbo F, Hildebrand F, Segata N, Cha CJ, Quince C. Lee K, et al. Among authors: segata n. Nat Commun. 2023 Mar 2;14(1):1191. doi: 10.1038/s41467-023-36633-7. Nat Commun. 2023. PMID: 36864029 Free PMC article.

9

Translating the Microbiome: What's the Target?

O'Toole PW, Ghosh TS, Goswami S, Manghi P, Segata N, Shanahan F. O'Toole PW, et al. Among authors: segata n. Gastroenterology. 2023 Aug;165(2):317-319. doi: 10.1053/j.gastro.2023.04.008. Epub 2023 Apr 23. Gastroenterology. 2023. PMID: 37094661 Free article. No abstract available.

10

Human microbiome cultivation expands with AI.

Selma-Royo M, Segata N, Ricci L. Selma-Royo M, et al. Among authors: segata n. Nat Biotechnol. 2023 Oct;41(10):1389-1391. doi: 10.1038/s41587-023-01852-2. Nat Biotechnol. 2023. PMID: 37349525 No abstract available.

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