Duda DM - Search Results

1

Probing the CRL4^DCAF12 interactions with MAGEA3 and CCT5 di-Glu C-terminal degrons.

Righetto GL, Yin Y, Duda DM, Vu V, Szewczyk MM, Zeng H, Li Y, Loppnau P, Mei T, Li YY, Seitova A, Patrick AN, Brazeau JF, Chaudhry C, Barsyte-Lovejoy D, Santhakumar V, Halabelian L. Righetto GL, et al. Among authors: duda dm. PNAS Nexus. 2024 Apr 10;3(4):pgae153. doi: 10.1093/pnasnexus/pgae153. eCollection 2024 Apr. PNAS Nexus. 2024. PMID: 38665159 Free PMC article.

2

Activity-based profiling of cullin-RING E3 networks by conformation-specific probes.

Henneberg LT, Singh J, Duda DM, Baek K, Yanishevski D, Murray PJ, Mann M, Sidhu SS, Schulman BA. Henneberg LT, et al. Among authors: duda dm. Nat Chem Biol. 2023 Dec;19(12):1513-1523. doi: 10.1038/s41589-023-01392-5. Epub 2023 Aug 31. Nat Chem Biol. 2023. PMID: 37653169 Free PMC article.

3

Activity-based profiling of cullin-RING ligase networks by conformation-specific probes.

Henneberg LT, Singh J, Duda DM, Baek K, Yanishevski D, Murray PJ, Mann M, Sidhu SS, Schulman B. Henneberg LT, et al. Among authors: duda dm. bioRxiv [Preprint]. 2023 Jan 17:2023.01.14.524048. doi: 10.1101/2023.01.14.524048. bioRxiv. 2023. PMID: 36711970 Free PMC article. Updated. Preprint.

4

Site-directed integration of exogenous DNA into the soybean genome by LbCas12a fused to a plant viral HUH endonuclease.

Nagy ED, Kuehn R, Wang D, Shrawat A, Duda DM, Groat JR, Yang P, Beach S, Zhang Y, Rymarquis L, Carter SL, Gaeta RT, Gilbertson LA. Nagy ED, et al. Among authors: duda dm. Plant J. 2022 Aug;111(3):905-916. doi: 10.1111/tpj.15849. Epub 2022 Jun 19. Plant J. 2022. PMID: 35635764 Free article.

5

Structural Studies of HHARI/UbcH7∼Ub Reveal Unique E2∼Ub Conformational Restriction by RBR RING1.

Dove KK, Olszewski JL, Martino L, Duda DM, Wu XS, Miller DJ, Reiter KH, Rittinger K, Schulman BA, Klevit RE. Dove KK, et al. Among authors: duda dm. Structure. 2017 Jun 6;25(6):890-900.e5. doi: 10.1016/j.str.2017.04.013. Epub 2017 May 25. Structure. 2017. PMID: 28552575 Free PMC article.

6

Two Distinct Types of E3 Ligases Work in Unison to Regulate Substrate Ubiquitylation.

Scott DC, Rhee DY, Duda DM, Kelsall IR, Olszewski JL, Paulo JA, de Jong A, Ovaa H, Alpi AF, Harper JW, Schulman BA. Scott DC, et al. Among authors: duda dm. Cell. 2016 Aug 25;166(5):1198-1214.e24. doi: 10.1016/j.cell.2016.07.027. Cell. 2016. PMID: 27565346 Free PMC article.

7

Defining roles of PARKIN and ubiquitin phosphorylation by PINK1 in mitochondrial quality control using a ubiquitin replacement strategy.

Ordureau A, Heo JM, Duda DM, Paulo JA, Olszewski JL, Yanishevski D, Rinehart J, Schulman BA, Harper JW. Ordureau A, et al. Among authors: duda dm. Proc Natl Acad Sci U S A. 2015 May 26;112(21):6637-42. doi: 10.1073/pnas.1506593112. Epub 2015 May 12. Proc Natl Acad Sci U S A. 2015. PMID: 25969509 Free PMC article.

8

Quantitative proteomics reveal a feedforward mechanism for mitochondrial PARKIN translocation and ubiquitin chain synthesis.

Ordureau A, Sarraf SA, Duda DM, Heo JM, Jedrychowski MP, Sviderskiy VO, Olszewski JL, Koerber JT, Xie T, Beausoleil SA, Wells JA, Gygi SP, Schulman BA, Harper JW. Ordureau A, et al. Among authors: duda dm. Mol Cell. 2014 Nov 6;56(3):360-375. doi: 10.1016/j.molcel.2014.09.007. Epub 2014 Oct 2. Mol Cell. 2014. PMID: 25284222 Free PMC article.

9

TRIAD1 and HHARI bind to and are activated by distinct neddylated Cullin-RING ligase complexes.

Kelsall IR, Duda DM, Olszewski JL, Hofmann K, Knebel A, Langevin F, Wood N, Wightman M, Schulman BA, Alpi AF. Kelsall IR, et al. Among authors: duda dm. EMBO J. 2013 Oct 30;32(21):2848-60. doi: 10.1038/emboj.2013.209. Epub 2013 Sep 27. EMBO J. 2013. PMID: 24076655 Free PMC article.

10

Structure of HHARI, a RING-IBR-RING ubiquitin ligase: autoinhibition of an Ariadne-family E3 and insights into ligation mechanism.

Duda DM, Olszewski JL, Schuermann JP, Kurinov I, Miller DJ, Nourse A, Alpi AF, Schulman BA. Duda DM, et al. Structure. 2013 Jun 4;21(6):1030-41. doi: 10.1016/j.str.2013.04.019. Epub 2013 May 23. Structure. 2013. PMID: 23707686 Free PMC article.

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