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Page 1
EMDB Web Resources.
Abbott S, Iudin A, Korir PK, Somasundharam S, Patwardhan A. Abbott S, et al. Curr Protoc Bioinformatics. 2018 Mar;61(1):5.10.1-5.10.12. doi: 10.1002/cpbi.48. Epub 2018 Apr 9. Curr Protoc Bioinformatics. 2018. PMID: 30008982 Free PMC article.
EMDataBank unified data resource for 3DEM.
Lawson CL, Patwardhan A, Baker ML, Hryc C, Garcia ES, Hudson BP, Lagerstedt I, Ludtke SJ, Pintilie G, Sala R, Westbrook JD, Berman HM, Kleywegt GJ, Chiu W. Lawson CL, et al. Nucleic Acids Res. 2016 Jan 4;44(D1):D396-403. doi: 10.1093/nar/gkv1126. Epub 2015 Nov 17. Nucleic Acids Res. 2016. PMID: 26578576 Free PMC article.
ACPYPE - AnteChamber PYthon Parser interfacE.
Sousa da Silva AW, Vranken WF. Sousa da Silva AW, et al. BMC Res Notes. 2012 Jul 23;5:367. doi: 10.1186/1756-0500-5-367. BMC Res Notes. 2012. PMID: 22824207 Free PMC article.
Small molecule annotation for the Protein Data Bank.
Sen S, Young J, Berrisford JM, Chen M, Conroy MJ, Dutta S, Di Costanzo L, Gao G, Ghosh S, Hudson BP, Igarashi R, Kengaku Y, Liang Y, Peisach E, Persikova I, Mukhopadhyay A, Narayanan BC, Sahni G, Sato J, Sekharan M, Shao C, Tan L, Zhuravleva MA. Sen S, et al. Database (Oxford). 2014 Nov 25;2014:bau116. doi: 10.1093/database/bau116. Print 2014. Database (Oxford). 2014. PMID: 25425036 Free PMC article.
SIFTS: Structure Integration with Function, Taxonomy and Sequences resource.
Velankar S, Dana JM, Jacobsen J, van Ginkel G, Gane PJ, Luo J, Oldfield TJ, O'Donovan C, Martin MJ, Kleywegt GJ. Velankar S, et al. Nucleic Acids Res. 2013 Jan;41(Database issue):D483-9. doi: 10.1093/nar/gks1258. Epub 2012 Nov 29. Nucleic Acids Res. 2013. PMID: 23203869 Free PMC article.
PDBe: Protein Data Bank in Europe.
Velankar S, Alhroub Y, Best C, Caboche S, Conroy MJ, Dana JM, Fernandez Montecelo MA, van Ginkel G, Golovin A, Gore SP, Gutmanas A, Haslam P, Hendrickx PM, Heuson E, Hirshberg M, John M, Lagerstedt I, Mir S, Newman LE, Oldfield TJ, Patwardhan A, Rinaldi L, Sahni G, Sanz-García E, Sen S, Slowley R, Suarez-Uruena A, Swaminathan GJ, Symmons MF, Vranken WF, Wainwright M, Kleywegt GJ. Velankar S, et al. Nucleic Acids Res. 2012 Jan;40(Database issue):D445-52. doi: 10.1093/nar/gkr998. Epub 2011 Nov 21. Nucleic Acids Res. 2012. PMID: 22110033 Free PMC article.
Trends in the Electron Microscopy Data Bank (EMDB).
Patwardhan A. Patwardhan A. Acta Crystallogr D Struct Biol. 2017 Jun 1;73(Pt 6):503-508. doi: 10.1107/S2059798317004181. Epub 2017 Apr 20. Acta Crystallogr D Struct Biol. 2017. PMID: 28580912 Free PMC article.